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February 2018


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Table of Contents:

2D Classification - Weird class distribution and class behaviour (9 messages)
2D classification fail (2 messages)
Bioimaging developer at EMBL-EBI (1 message)
command wrong while optimise parameters for auto-picking (2 messages)
CryoEM position at Heptares Therapeutics (1 message)
ctffind 4.1.10 (1 message)
CTFFIND very slow (5 messages)
Duplicated re-extracted particles - suggestion (7 messages)
EM Validation Developer Post (1 message)
Faculty openings at University of Vienna: Professorship and 2 tenure track positions (1 message)
generate a map directly from a star file of subtomogram data (8 messages)
How to re-run a finished job (3 messages)
Job Advertisement (1 message)
LMB cryoEM course 2017 (1 message)
Local ctf estimation 'breaks' after several micrographs (5 messages)
Masked and unmasked FSC has ~1.8A difference at 0.143 cut off (4 messages)
MTF in postprocessing (2 messages)
PhD Fellowship in cryo-EM at NNF-CPR, University of Copenhagen (1 message)
PhD in structural biology (1 message)
PhD Positions in Integrative Structural Biology in Vienna (1 message)
Post-doctoral position - University of Sheffield (1 message)
Postdoctoral scientist position in cryo-ET of host-virus interaction. (1 message)
relion 3D refine error (5 messages)
relion 3D refinement hits time wall limit (3 messages)
Reminder: CCP-EM Spring Symposium IV: 11-12th April 2018 Keele University (1 message)
Rescaling method implemented in RELION (3 messages)
Research Assistant - University of Oxford - Peter McHugh Lab (1 message)
running relion with GUI on cluster (5 messages)
Simulating images (3 messages)
Software Engineer (Web Development) for ISPyB and SynchWeb at Diamond. (1 message)
space requirement for localrec files (1 message)
To use, or not to use? That is my question about 2x Binned Data (3 messages)
unblur from relion (1 message)
unsubscribe (1 message)
Vacancy for scientific data curator (EMDB/EMPIAR) at EMBL-EBI (1 message)
wrongs about "Making templates for auto-picking" in the "relion21_tutorial" ,section 3.6 (2 messages)
Young Independent Researcher Groups: a Postdoc-Programme for Innovative, Interdisciplinary Teams (1 message)

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Subject Sorted by Subject, Chronologically

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Date

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New Thread

2D Classification - Weird class distribution and class behaviour

2D Classification - Weird class distribution and class behaviour

Yang Suo <[log in to unmask]>

Mon, 12 Feb 2018 19:37:29 +0000

116 lines

Re: 2D Classification - Weird class distribution and class behaviour

Dan Asarnow <[log in to unmask]>

Mon, 12 Feb 2018 11:56:13 -0800

161 lines

Re: 2D Classification - Weird class distribution and class behaviour

Yehuda Halfon <[log in to unmask]>

Mon, 12 Feb 2018 19:57:36 +0000

132 lines

Re: 2D Classification - Weird class distribution and class behaviour

Matzov Donna <[log in to unmask]>

Mon, 12 Feb 2018 20:11:07 +0000

210 lines

Re: 2D Classification - Weird class distribution and class behaviour

Sjors Scheres <[log in to unmask]>

Mon, 12 Feb 2018 20:51:45 -0000

75 lines

Re: 2D Classification - Weird class distribution and class behaviour

Dan Asarnow <[log in to unmask]>

Mon, 12 Feb 2018 14:02:58 -0800

700 lines

Re: 2D Classification - Weird class distribution and class behaviour

Dan Asarnow <[log in to unmask]>

Mon, 12 Feb 2018 14:06:50 -0800

242 lines

Re: 2D Classification - Weird class distribution and class behaviour

Amer Alam <[log in to unmask]>

Tue, 13 Feb 2018 08:32:38 +0000

21 lines

Re: 2D Classification - Weird class distribution and class behaviour

Sjors Scheres <[log in to unmask]>

Tue, 13 Feb 2018 09:26:25 +0000

43 lines

New Thread

2D classification fail

2D classification fail

Tian. Li <[log in to unmask]>

Tue, 6 Feb 2018 14:09:28 +0000

36 lines

Re: 2D classification fail

Dari Kimanius <[log in to unmask]>

Wed, 7 Feb 2018 11:26:34 +0100

102 lines

New Thread

Bioimaging developer at EMBL-EBI

Bioimaging developer at EMBL-EBI

Ardan Patwardhan <[log in to unmask]>

Thu, 15 Feb 2018 17:46:49 +0000

87 lines

New Thread

command wrong while optimise parameters for auto-picking

command wrong while optimise parameters for auto-picking

CuiKunlei <[log in to unmask]>

Fri, 9 Feb 2018 11:54:03 +0800

64 lines

Re: command wrong while optimise parameters for auto-picking

CuiKunlei <[log in to unmask]>

Fri, 9 Feb 2018 11:56:25 +0800

86 lines

New Thread

CryoEM position at Heptares Therapeutics

CryoEM position at Heptares Therapeutics

Stacey Southall <[log in to unmask]>

Tue, 13 Feb 2018 15:49:03 +0000

31 lines

New Thread

ctffind 4.1.10

ctffind 4.1.10

Alexis Rohou <[log in to unmask]>

Thu, 8 Feb 2018 09:00:40 -0800

37 lines

New Thread

CTFFIND very slow

CTFFIND very slow

Yehuda Halfon <[log in to unmask]>

Thu, 8 Feb 2018 16:20:56 +0000

55 lines

Re: CTFFIND very slow

Alexis Rohou <[log in to unmask]>

Thu, 8 Feb 2018 08:48:54 -0800

103 lines

Re: CTFFIND very slow

Gregory Sharov <[log in to unmask]>

Thu, 8 Feb 2018 16:48:38 +0000

109 lines

Re: CTFFIND very slow

Takanori Nakane <[log in to unmask]>

Thu, 8 Feb 2018 17:20:19 -0000

52 lines

Re: CTFFIND very slow

Yehuda Halfon <[log in to unmask]>

Thu, 8 Feb 2018 17:44:11 +0000

75 lines

New Thread

Duplicated re-extracted particles - suggestion

Duplicated re-extracted particles - suggestion

Leonid Sazanov <[log in to unmask]>

Fri, 16 Feb 2018 14:26:08 +0000

33 lines

Re: Duplicated re-extracted particles - suggestion

Yong Zi Tan <[log in to unmask]>

Fri, 16 Feb 2018 14:35:08 +0000

122 lines

Re: Duplicated re-extracted particles - suggestion

Bjoern Forsberg <[log in to unmask]>

Fri, 16 Feb 2018 17:03:28 +0100

233 lines

Re: Duplicated re-extracted particles - suggestion

Leonid Sazanov <[log in to unmask]>

Fri, 16 Feb 2018 18:22:40 +0100

284 lines

Re: Duplicated re-extracted particles - suggestion

Sjors Scheres <[log in to unmask]>

Fri, 16 Feb 2018 17:55:36 +0000

153 lines

Re: Duplicated re-extracted particles - suggestion

Axel Brilot <[log in to unmask]>

Fri, 16 Feb 2018 12:18:05 -0800

91 lines

Re: Duplicated re-extracted particles - suggestion

Carlos Oscar Sorzano <[log in to unmask]>

Sun, 18 Feb 2018 12:59:33 +0100

163 lines

New Thread

EM Validation Developer Post

EM Validation Developer Post

Maya Topf <[log in to unmask]>

Mon, 12 Feb 2018 08:24:00 +0000

92 lines

New Thread

Faculty openings at University of Vienna: Professorship and 2 tenure track positions

Faculty openings at University of Vienna: Professorship and 2 tenure track positions

Kristina Djinovic Carugo <[log in to unmask]>

Sat, 10 Feb 2018 09:58:54 +0100

4362 lines

New Thread

generate a map directly from a star file of subtomogram data

generate a map directly from a star file of subtomogram data

Rui Yan <[log in to unmask]>

Sat, 3 Feb 2018 10:40:19 +0000

72 lines

Re: generate a map directly from a star file of subtomogram data

Qiang Guo <[log in to unmask]>

Sat, 3 Feb 2018 22:25:39 +0100

192 lines

Re: generate a map directly from a star file of subtomogram data

Rui Yan <[log in to unmask]>

Sun, 4 Feb 2018 00:30:26 +0000

22 lines

Re: generate a map directly from a star file of subtomogram data

Sjors Scheres <[log in to unmask]>

Sun, 4 Feb 2018 16:09:47 -0000

92 lines

Re: generate a map directly from a star file of subtomogram data

Rui Yan <[log in to unmask]>

Mon, 5 Feb 2018 17:57:15 +0000

28 lines

Re: generate a map directly from a star file of subtomogram data

Sjors Scheres <[log in to unmask]>

Tue, 6 Feb 2018 10:09:46 +0000

36 lines

Re: generate a map directly from a star file of subtomogram data

Rui Yan <[log in to unmask]>

Tue, 6 Feb 2018 15:59:42 +0000

25 lines

Re: generate a map directly from a star file of subtomogram data

Sjors Scheres <[log in to unmask]>

Tue, 6 Feb 2018 16:08:05 +0000

30 lines

New Thread

How to re-run a finished job

How to re-run a finished job

CuiKunlei <[log in to unmask]>

Sun, 11 Feb 2018 14:45:11 +0800

33 lines

Re: How to re-run a finished job

Guillaume Gaullier <[log in to unmask]>

Sun, 11 Feb 2018 00:22:47 -0700

65 lines

Re: How to re-run a finished job

CuiKunlei <[log in to unmask]>

Sun, 11 Feb 2018 18:29:45 +0800

63 lines

New Thread

Job Advertisement

Job Advertisement

Michaela James <[log in to unmask]>

Mon, 5 Feb 2018 23:07:52 +0000

28684 lines

New Thread

LMB cryoEM course 2017

LMB cryoEM course 2017

Sjors Scheres <[log in to unmask]>

Thu, 1 Feb 2018 16:18:55 +0000

40 lines

New Thread

Local ctf estimation 'breaks' after several micrographs

Local ctf estimation 'breaks' after several micrographs

Andrey Malyutin <[log in to unmask]>

Tue, 13 Feb 2018 04:10:53 +0000

26 lines

Re: Local ctf estimation 'breaks' after several micrographs

Oliver Clarke <[log in to unmask]>

Tue, 13 Feb 2018 00:59:05 -0500

1802 lines

Re: Local ctf estimation 'breaks' after several micrographs

Reza Khayat <[log in to unmask]>

Tue, 13 Feb 2018 13:37:35 +0000

1876 lines

Re: Local ctf estimation 'breaks' after several micrographs

Zack Berndsen <[log in to unmask]>

Tue, 13 Feb 2018 18:45:43 +0000

148 lines

Re: Local ctf estimation 'breaks' after several micrographs

Andrey Malyutin <[log in to unmask]>

Tue, 13 Feb 2018 21:18:38 +0000

12 lines

New Thread

Masked and unmasked FSC has ~1.8A difference at 0.143 cut off

Masked and unmasked FSC has ~1.8A difference at 0.143 cut off

Sandip Basak <[log in to unmask]>

Thu, 8 Feb 2018 03:23:26 +0000

451 lines

Re: Masked and unmasked FSC has ~1.8A difference at 0.143 cut off

Axel Brilot <[log in to unmask]>

Wed, 7 Feb 2018 21:10:41 -0800

80 lines

Re: Masked and unmasked FSC has ~1.8A difference at 0.143 cut off

Sjors Scheres <[log in to unmask]>

Thu, 8 Feb 2018 10:45:12 +0000

43 lines

Re: Masked and unmasked FSC has ~1.8A difference at 0.143 cut off

Sandip Basak <[log in to unmask]>

Thu, 8 Feb 2018 10:27:09 -0500

51 lines

New Thread

MTF in postprocessing

MTF in postprocessing

Bubeck, Doryen A <[log in to unmask]>

Mon, 5 Feb 2018 13:21:00 +0000

68 lines

Re: MTF in postprocessing

Sjors Scheres <[log in to unmask]>

Mon, 5 Feb 2018 17:18:19 +0000

125 lines

New Thread

PhD Fellowship in cryo-EM at NNF-CPR, University of Copenhagen

PhD Fellowship in cryo-EM at NNF-CPR, University of Copenhagen

Nicholas Michael I Taylor <[log in to unmask]>

Thu, 15 Feb 2018 15:06:07 +0000

205 lines

New Thread

PhD in structural biology

PhD in structural biology

Camilo Perez <[log in to unmask]>

Sat, 17 Feb 2018 08:02:36 +0100

46 lines

New Thread

PhD Positions in Integrative Structural Biology in Vienna

PhD Positions in Integrative Structural Biology in Vienna

Kristina Djinovic Carugo <[log in to unmask]>

Tue, 13 Feb 2018 11:21:59 +0100

1002 lines

New Thread

Post-doctoral position - University of Sheffield

Post-doctoral position - University of Sheffield

Julien Bergeron <[log in to unmask]>

Tue, 13 Feb 2018 11:39:49 +0000

80 lines

New Thread

Postdoctoral scientist position in cryo-ET of host-virus interaction.

Postdoctoral scientist position in cryo-ET of host-virus interaction.

Amedee des Georges <[log in to unmask]>

Sat, 10 Feb 2018 00:12:11 +0000

172 lines

New Thread

relion 3D refine error

relion 3D refine error

Chen Sun <[log in to unmask]>

Fri, 9 Feb 2018 20:20:30 +0000

128 lines

Re: relion 3D refine error

Joshua Lobo <[log in to unmask]>

Fri, 9 Feb 2018 18:11:54 -0600

145 lines

Re: relion 3D refine error

Chen Sun <[log in to unmask]>

Sat, 10 Feb 2018 16:41:07 +0000

208 lines

Re: relion 3D refine error

Sjors Scheres <[log in to unmask]>

Sat, 10 Feb 2018 18:25:10 -0000

97 lines

Re: relion 3D refine error

Chen Sun <[log in to unmask]>

Sat, 10 Feb 2018 19:53:23 +0000

272 lines

New Thread

relion 3D refinement hits time wall limit

relion 3D refinement hits time wall limit

Valerie Biou <[log in to unmask]>

Wed, 14 Feb 2018 17:00:42 +0100

35 lines

Re: relion 3D refinement hits time wall limit

Bjoern Forsberg <[log in to unmask]>

Wed, 14 Feb 2018 17:13:00 +0100

155 lines

Re: relion 3D refinement hits time wall limit

Sjors Scheres <[log in to unmask]>

Thu, 15 Feb 2018 09:38:40 +0000

46 lines

New Thread

Reminder: CCP-EM Spring Symposium IV: 11-12th April 2018 Keele University

Reminder: CCP-EM Spring Symposium IV: 11-12th April 2018 Keele University

Tom Burnley <[log in to unmask]>

Thu, 8 Feb 2018 10:02:22 +0000

174 lines

New Thread

Rescaling method implemented in RELION

Rescaling method implemented in RELION

Ali Khan <[log in to unmask]>

Fri, 2 Feb 2018 23:30:39 +0000

20 lines

Re: Rescaling method implemented in RELION

Dari Kimanius <[log in to unmask]>

Sat, 3 Feb 2018 01:31:50 +0100

56 lines

Re: Rescaling method implemented in RELION

Ali Khan <[log in to unmask]>

Fri, 2 Feb 2018 19:59:15 -0500

133 lines

New Thread

Research Assistant - University of Oxford - Peter McHugh Lab

Research Assistant - University of Oxford - Peter McHugh Lab

Denis Ptchelkine <[log in to unmask]>

Thu, 8 Feb 2018 17:28:13 +0000

50 lines

New Thread

running relion with GUI on cluster

running relion with GUI on cluster

Benoist LAURENT <[log in to unmask]>

Thu, 15 Feb 2018 16:07:54 +0100

38 lines

Re: running relion with GUI on cluster

Sjors Scheres <[log in to unmask]>

Thu, 15 Feb 2018 15:31:41 +0000

95 lines

Re: running relion with GUI on cluster

Lugmayr, Wolfgang <[log in to unmask]>

Thu, 15 Feb 2018 17:18:05 +0100

79 lines

Re: running relion with GUI on cluster

Abhiram Chintangal <[log in to unmask]>

Thu, 15 Feb 2018 12:16:32 -0800

224 lines

Re: running relion with GUI on cluster

Sjors Scheres <[log in to unmask]>

Sat, 17 Feb 2018 10:15:27 -0000

94 lines

New Thread

Simulating images

Simulating images

Thomas Cleveland <[log in to unmask]>

Sun, 11 Feb 2018 22:52:09 -0500

40 lines

Re: Simulating images

Joshua Lobo <[log in to unmask]>

Sun, 11 Feb 2018 22:57:01 -0600

40 lines

Re: Simulating images

Dmitry Lyumkis <[log in to unmask]>

Mon, 12 Feb 2018 05:18:37 +0000

104 lines

New Thread

Software Engineer (Web Development) for ISPyB and SynchWeb at Diamond.

Software Engineer (Web Development) for ISPyB and SynchWeb at Diamond.

Alun Ashton <[log in to unmask]>

Mon, 5 Feb 2018 16:29:28 +0000

60 lines

New Thread

space requirement for localrec files

space requirement for localrec files

Dieter Blaas <[log in to unmask]>

Thu, 8 Feb 2018 08:06:19 +0100

35 lines

New Thread

To use, or not to use? That is my question about 2x Binned Data

To use, or not to use? That is my question about 2x Binned Data

Kako <[log in to unmask]>

Mon, 12 Feb 2018 22:51:07 -0500

115 lines

Re: To use, or not to use? That is my question about 2x Binned Data

Joshua Lobo <[log in to unmask]>

Tue, 13 Feb 2018 00:15:01 -0600

136 lines

Re: To use, or not to use? That is my question about 2x Binned Data

Sjors Scheres <[log in to unmask]>

Tue, 13 Feb 2018 09:29:13 +0000

75 lines

New Thread

unblur from relion

unblur from relion

Leonid Sazanov <[log in to unmask]>

Wed, 14 Feb 2018 10:25:51 +0000

20 lines

New Thread

unsubscribe

unsubscribe

Peter Metcalf <[log in to unmask]>

Sat, 10 Feb 2018 19:01:55 +0000

36 lines

New Thread

Vacancy for scientific data curator (EMDB/EMPIAR) at EMBL-EBI

Vacancy for scientific data curator (EMDB/EMPIAR) at EMBL-EBI

Ardan Patwardhan <[log in to unmask]>

Fri, 16 Feb 2018 13:57:05 +0000

96 lines

New Thread

wrongs about "Making templates for auto-picking" in the "relion21_tutorial" ,section 3.6

wrongs about "Making templates for auto-picking" in the "relion21_tutorial" ,section 3.6

CuiKunlei <[log in to unmask]>

Wed, 7 Feb 2018 23:54:00 +0800

701 lines

Re: wrongs about "Making templates for auto-picking" in the "relion21_tutorial" ,section 3.6

Joshua Lobo <[log in to unmask]>

Wed, 7 Feb 2018 11:17:55 -0600

736 lines

New Thread

Young Independent Researcher Groups: a Postdoc-Programme for Innovative, Interdisciplinary Teams

Young Independent Researcher Groups: a Postdoc-Programme for Innovative, Interdisciplinary Teams

Dieter Blaas <[log in to unmask]>

Thu, 8 Feb 2018 10:33:04 +0100

45 lines

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