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July 2016


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Table of Contents:

"normalise error: 2*bg_radius is larger than image size!" (2 messages)
2D variance map (4 messages)
Announcement: Map Volume Deposition to EMDB Will Be Mandatory for PDB Depositions of 3DEM models Starting September 6th, 2016 (1 message)
Auto picking issue (1 message)
AW: [ccpem] Optimal use of a single large multi-core system (1 message)
CCP-EM Leeds RELION Workshop - 19th September 2016 (1 message)
Compression of super resolution counting mode direct electron detector images (e.g. from Gatan K2) (7 messages)
cryo-EM training workshop at Diamond (eBIC) (1 message)
Electron Microscopy Laboratory Manager post in London (1 message)
Empty MultidimArray! (2 messages)
Error at particle sorting step (1 message)
Error running CTF correction (3 messages)
Faculty and senior experimentalist positions in CryoEM at Sheffield, UK. (1 message)
FACULTY POSITION IN CRYO ELECTRON MICROSCOPY - UNIVERSITY OF CALIFORNIA, IRVINE (1 message)
Fall 2016 MicroED workshop at Janelia Research Campus (Reminder) (1 message)
Finishing system configuration for Relion 2.0 (9 messages)
flipping the handedness of a structure (1 message)
FW: Cryo-EM equipment grants (1 message)
Fwd: [ccpem] Auto picking issue (1 message)
Gctf on tiltserie (1 message)
Glycan refinement in Phenix.real_space_refine (2 messages)
group leader position in Vienna (1 message)
Inner soft masking for a virus particle in Relion (1 message)
Masking regions using Relion (2 messages)
Missing file in tutorial? (3 messages)
Native PAGE for basic proteins (1 message)
Optimal use of a single large multi-core system (3 messages)
parallel processing of ctf models in tomography work flow (2 messages)
particle extraction for tomography memory leak (1 message)
Position opening: Scientist for Cryo-EM at ESRF (1 message)
Postdoc / Engineer's position in high-end cryo-EM data collection available in Basel, Switzerland (1 message)
Relion 1.4 Installation on iMac El Capitan (1 message)
Remainder Special issue on "Cryo-electron Microscopy Image Analysis Methods and Applications in Structural Biology and Biomedical Research" (1 message)
separate domain refinement (2 messages)
Software development and support role at Diamond (eBIC) (1 message)
Sparx locres -sxlocres.py (1 message)
Stddev of image particle is Zero! Skipping normalisation (3 messages)

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Subject Sorted by Subject, Chronologically

From

Date

Size

New Thread

"normalise error: 2*bg_radius is larger than image size!"

"normalise error: 2*bg_radius is larger than image size!"

Rubbiya Ali <[log in to unmask]>

Tue, 19 Jul 2016 03:46:55 +1000

73 lines

Re: "normalise error: 2*bg_radius is larger than image size!"

Sjors Scheres <[log in to unmask]>

Tue, 19 Jul 2016 14:42:07 +0100

49 lines

New Thread

2D variance map

Re: 2D variance map

Morris, Kyle <[log in to unmask]>

Wed, 6 Jul 2016 17:08:04 +0000

39 lines

Re: 2D variance map

Sjors Scheres <[log in to unmask]>

Thu, 7 Jul 2016 09:22:48 +0100

69 lines

Re: 2D variance map

Morris, Kyle <[log in to unmask]>

Fri, 8 Jul 2016 00:21:14 +0000

55 lines

Re: 2D variance map

Sjors Scheres <[log in to unmask]>

Fri, 8 Jul 2016 09:51:58 +0100

91 lines

New Thread

Announcement: Map Volume Deposition to EMDB Will Be Mandatory for PDB Depositions of 3DEM models Starting September 6th, 2016

Announcement: Map Volume Deposition to EMDB Will Be Mandatory for PDB Depositions of 3DEM models Starting September 6th, 2016

Ardan Patwardhan <[log in to unmask]>

Wed, 6 Jul 2016 17:38:05 +0100

122 lines

New Thread

Auto picking issue

Auto picking issue

Rubbiya Ali <[log in to unmask]>

Fri, 22 Jul 2016 14:30:02 +0000

897 lines

New Thread

AW: [ccpem] Optimal use of a single large multi-core system

AW: [ccpem] Optimal use of a single large multi-core system

Benoît Zuber <[log in to unmask]>

Fri, 29 Jul 2016 14:25:58 +0000

53 lines

New Thread

CCP-EM Leeds RELION Workshop - 19th September 2016

CCP-EM Leeds RELION Workshop - 19th September 2016

Tom Burnley <[log in to unmask]>

Wed, 27 Jul 2016 10:38:42 +0100

59 lines

New Thread

Compression of super resolution counting mode direct electron detector images (e.g. from Gatan K2)

Compression of super resolution counting mode direct electron detector images (e.g. from Gatan K2)

Ardan Patwardhan <[log in to unmask]>

Thu, 7 Jul 2016 13:36:02 +0100

76 lines

Re: Compression of super resolution counting mode direct electron detector images (e.g. from Gatan K2)

Ali Punjani <[log in to unmask]>

Thu, 7 Jul 2016 13:17:06 +0000

161 lines

Re: Compression of super resolution counting mode direct electron detector images (e.g. from Gatan K2)

Radostin Danev <[log in to unmask]>

Thu, 7 Jul 2016 15:49:12 +0200

422 lines

Re: Compression of super resolution counting mode direct electron detector images (e.g. from Gatan K2)

Robert McLeod <[log in to unmask]>

Thu, 7 Jul 2016 14:13:12 +0000

119 lines

Re: Compression of super resolution counting mode direct electron detector images (e.g. from Gatan K2)

Ali Punjani <[log in to unmask]>

Thu, 7 Jul 2016 14:27:03 +0000

308 lines

Re: Compression of super resolution counting mode direct electron detector images (e.g. from Gatan K2)

Dimitry Tegunov <[log in to unmask]>

Thu, 7 Jul 2016 16:07:07 +0100

30 lines

Re: Compression of super resolution counting mode direct electron detector images (e.g. from Gatan K2)

Craig Yoshioka <[log in to unmask]>

Thu, 7 Jul 2016 16:20:14 +0000

853 lines

New Thread

cryo-EM training workshop at Diamond (eBIC)

cryo-EM training workshop at Diamond (eBIC)

Bubeck, Doryen A <[log in to unmask]>

Thu, 28 Jul 2016 08:59:31 +0000

91 lines

New Thread

Electron Microscopy Laboratory Manager post in London

Electron Microscopy Laboratory Manager post in London

Carolyn Moores <[log in to unmask]>

Mon, 25 Jul 2016 17:03:37 +0100

136 lines

New Thread

Empty MultidimArray!

Empty MultidimArray!

Yashar Sadian <[log in to unmask]>

Sun, 3 Jul 2016 17:23:06 +0100

31 lines

Re: Empty MultidimArray!

Sjors Scheres <[log in to unmask]>

Mon, 4 Jul 2016 21:15:35 +0100

49 lines

New Thread

Error at particle sorting step

Error at particle sorting step

Rubbiya Ali <[log in to unmask]>

Sun, 24 Jul 2016 20:48:51 +1000

50 lines

New Thread

Error running CTF correction

Error running CTF correction

Rubbiya Ali <[log in to unmask]>

Fri, 15 Jul 2016 14:00:17 +0000

214 lines

Re: Error running CTF correction

Alexis Rohou <[log in to unmask]>

Fri, 15 Jul 2016 10:25:33 -0400

223 lines

Re: Error running CTF correction

Rubbiya Ali <[log in to unmask]>

Sat, 16 Jul 2016 08:06:35 +1000

234 lines

New Thread

Faculty and senior experimentalist positions in CryoEM at Sheffield, UK.

Faculty and senior experimentalist positions in CryoEM at Sheffield, UK.

Per Bullough <[log in to unmask]>

Mon, 18 Jul 2016 15:14:21 +0100

86 lines

New Thread

FACULTY POSITION IN CRYO ELECTRON MICROSCOPY - UNIVERSITY OF CALIFORNIA, IRVINE

FACULTY POSITION IN CRYO ELECTRON MICROSCOPY - UNIVERSITY OF CALIFORNIA, IRVINE

Luecke, Hartmut <[log in to unmask]>

Tue, 26 Jul 2016 05:39:11 +0000

930 lines

New Thread

Fall 2016 MicroED workshop at Janelia Research Campus (Reminder)

Fall 2016 MicroED workshop at Janelia Research Campus (Reminder)

Hattne, Johan <[log in to unmask]>

Thu, 21 Jul 2016 20:36:14 +0000

43 lines

New Thread

Finishing system configuration for Relion 2.0

Finishing system configuration for Relion 2.0

Alberto Riera <[log in to unmask]>

Thu, 14 Jul 2016 12:24:45 +0100

115 lines

Re: Finishing system configuration for Relion 2.0

Erik Lindahl <[log in to unmask]>

Thu, 14 Jul 2016 08:09:59 -0400

190 lines

Re: Finishing system configuration for Relion 2.0

Craig Yoshioka <[log in to unmask]>

Thu, 14 Jul 2016 15:01:46 +0000

174 lines

Re: Finishing system configuration for Relion 2.0

Alberto Riera <[log in to unmask]>

Mon, 18 Jul 2016 10:42:02 +0100

326 lines

Re: Finishing system configuration for Relion 2.0

Sjors Scheres <[log in to unmask]>

Mon, 18 Jul 2016 12:41:37 +0100

144 lines

Re: Finishing system configuration for Relion 2.0

Alberto Riera <[log in to unmask]>

Mon, 18 Jul 2016 12:50:39 +0100

157 lines

Re: Finishing system configuration for Relion 2.0

Sjors Scheres <[log in to unmask]>

Mon, 18 Jul 2016 14:56:15 +0100

162 lines

Re: Finishing system configuration for Relion 2.0

Ludtke, Steven J <[log in to unmask]>

Mon, 18 Jul 2016 14:05:28 +0000

129 lines

Re: Finishing system configuration for Relion 2.0

Alberto Riera <[log in to unmask]>

Mon, 18 Jul 2016 15:10:02 +0100

150 lines

New Thread

flipping the handedness of a structure

Re: flipping the handedness of a structure

Gerard Kleywegt <[log in to unmask]>

Mon, 4 Jul 2016 18:28:30 +0100

102 lines

New Thread

FW: Cryo-EM equipment grants

FW: Cryo-EM equipment grants

Martyn Winn <[log in to unmask]>

Wed, 20 Jul 2016 11:51:31 +0000

216 lines

New Thread

Fwd: [ccpem] Auto picking issue

Fwd: [ccpem] Auto picking issue

Joshua Lobo <[log in to unmask]>

Fri, 22 Jul 2016 11:42:50 -0400

921 lines

New Thread

Gctf on tiltserie

Re: Gctf on tiltserie

Kai Zhang <[log in to unmask]>

Sat, 30 Jul 2016 12:06:46 +0100

67098 lines

New Thread

Glycan refinement in Phenix.real_space_refine

Glycan refinement in Phenix.real_space_refine

Simonas Masiulis <[log in to unmask]>

Tue, 5 Jul 2016 11:58:57 +0100

21 lines

Re: Glycan refinement in Phenix.real_space_refine

Jon Agirre <[log in to unmask]>

Tue, 5 Jul 2016 12:35:58 +0100

103 lines

New Thread

group leader position in Vienna

group leader position in Vienna

Dieter Blaas <[log in to unmask]>

Wed, 20 Jul 2016 14:51:55 +0200

227 lines

New Thread

Inner soft masking for a virus particle in Relion

Inner soft masking for a virus particle in Relion

Dong-Hua Chen <[log in to unmask]>

Sat, 30 Jul 2016 07:10:03 -0700

34 lines

New Thread

Masking regions using Relion

Masking regions using Relion

Sameer K Singh <[log in to unmask]>

Sat, 23 Jul 2016 19:25:49 +0000

160 lines

Re: Masking regions using Relion

Sjors Scheres <[log in to unmask]>

Sun, 24 Jul 2016 13:35:26 +0100

58 lines

New Thread

Missing file in tutorial?

Missing file in tutorial?

Adam Huffman <[log in to unmask]>

Mon, 4 Jul 2016 17:18:42 +0100

37 lines

Re: Missing file in tutorial?

Sjors Scheres <[log in to unmask]>

Wed, 6 Jul 2016 16:08:14 +0100

55 lines

Re: Missing file in tutorial?

Adam Huffman <[log in to unmask]>

Thu, 7 Jul 2016 12:01:35 +0100

74 lines

New Thread

Native PAGE for basic proteins

Native PAGE for basic proteins

nitika gaurav <[log in to unmask]>

Fri, 29 Jul 2016 21:30:02 +0530

42 lines

New Thread

Optimal use of a single large multi-core system

Optimal use of a single large multi-core system

Kasim Sader <[log in to unmask]>

Fri, 29 Jul 2016 15:13:02 +0100

24 lines

Re: Optimal use of a single large multi-core system

Craig Yoshioka <[log in to unmask]>

Fri, 29 Jul 2016 14:41:13 +0000

35 lines

Re: Optimal use of a single large multi-core system

Wolfgang Lugmayr <[log in to unmask]>

Fri, 29 Jul 2016 17:00:52 +0200

93 lines

New Thread

parallel processing of ctf models in tomography work flow

parallel processing of ctf models in tomography work flow

Christopher Akey <[log in to unmask]>

Tue, 19 Jul 2016 16:52:21 +0100

56 lines

Re: parallel processing of ctf models in tomography work flow

Wolfgang Lugmayr <[log in to unmask]>

Thu, 21 Jul 2016 11:59:31 +0200

86 lines

New Thread

particle extraction for tomography memory leak

particle extraction for tomography memory leak

Christopher Akey <[log in to unmask]>

Tue, 19 Jul 2016 16:38:53 +0100

33 lines

New Thread

Position opening: Scientist for Cryo-EM at ESRF

Position opening: Scientist for Cryo-EM at ESRF

Gordon LEONARD <[log in to unmask]>

Mon, 25 Jul 2016 16:04:48 +0200

22 lines

New Thread

Postdoc / Engineer's position in high-end cryo-EM data collection available in Basel, Switzerland

Postdoc / Engineer's position in high-end cryo-EM data collection available in Basel, Switzerland

Henning Stahlberg <[log in to unmask]>

Mon, 25 Jul 2016 08:24:09 +0000

65 lines

New Thread

Relion 1.4 Installation on iMac El Capitan

Relion 1.4 Installation on iMac El Capitan

Darbari, Vidya C <[log in to unmask]>

Tue, 12 Jul 2016 15:41:24 +0000

301 lines

New Thread

Remainder Special issue on "Cryo-electron Microscopy Image Analysis Methods and Applications in Structural Biology and Biomedical Research"

Remainder Special issue on "Cryo-electron Microscopy Image Analysis Methods and Applications in Structural Biology and Biomedical Research"

Javier Vargas <[log in to unmask]>

Mon, 11 Jul 2016 10:32:06 +0200

100 lines

New Thread

separate domain refinement

separate domain refinement

Grigory Sharov <[log in to unmask]>

Thu, 7 Jul 2016 14:52:12 +0200

200 lines

Re: separate domain refinement

Nazarov Sergey <[log in to unmask]>

Fri, 8 Jul 2016 08:12:30 +0000

355 lines

New Thread

Software development and support role at Diamond (eBIC)

Software development and support role at Diamond (eBIC)

Alun Ashton <[log in to unmask]>

Mon, 4 Jul 2016 15:38:58 +0000

179 lines

New Thread

Sparx locres -sxlocres.py

Sparx locres -sxlocres.py

Joshua Lobo <[log in to unmask]>

Thu, 7 Jul 2016 16:54:57 +0100

22 lines

New Thread

Stddev of image particle is Zero! Skipping normalisation

Stddev of image particle is Zero! Skipping normalisation

Yashar Sadian <[log in to unmask]>

Fri, 15 Jul 2016 16:53:49 +0100

27 lines

Re: Stddev of image particle is Zero! Skipping normalisation

Huy Bui <[log in to unmask]>

Fri, 15 Jul 2016 11:59:47 -0400

73 lines

Re: Stddev of image particle is Zero! Skipping normalisation

Sjors Scheres <[log in to unmask]>

Mon, 18 Jul 2016 09:15:37 +0100

42 lines

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