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May 2016


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Table of Contents:

2D classes particles look black (5 messages)
CCP-EM Spring Symposium - Live stream (1 message)
CCP-EM Spring Symposium - live streaming now on (1 message)
CCP-EM Spring Symposium Day Two (1 message)
Compiling Relion 1.4 single precision (1 message)
continue old run takes a long time to start (2 messages)
Cryo-EM Postdoctoral Position in Oxford to study Molecular mechanisms of DNA interstrand crosslink repair. (1 message)
ctffind error? (2 messages)
Data processing of high defocus data (3 messages)
De novo model building from medium-resolution cryo EM maps (1 message)
EMBO Practical Course: Cryo-Electron Microscopy and 3D Image Processing 2016 (2 messages)
ftlk complaining about X11 lib (7 messages)
Group leader position call in Integrated Structural Biology, Strasbourg (1 message)
Hands-On Workshop on Cryo-EM based Atomic Modeling (1 message)
Improved Worldwide Support for wwPDB Deposition, Validation, and Annotation (1 message)
micrograph_id out of range (2 messages)
more troubles compiling relion1.4 on mac (1 message)
MPI vs. pthreads and memory usage, --j behavior? (1 message)
New NMR and 3DEM Validation Reports for Archived PDB Structures (1 message)
Only 1 particles in group (1 message)
PDRA position available (1 message)
phase-flipped only images processing (1 message)
picking with templates (4 messages)
Position combining hard X-ray tomography with electron tomography to study neurodegenerative decease (1 message)
Post-doc position at Leeds University, UK (1 message)
Post-doctoral position to study glutamate receptors at the MRC LMB Cambridge (1 message)
Post-doctoral positions at IISER-TVM in Structural Molecular Biology. (1 message)
PostDoc (x2) in cryo-EM in London, UK (1 message)
Postdoctoral Fellow (Structural Biology Algorithm Developer) - Berkeley Lab (1 message)
Postdoctoral position MRC Laboratory of Molecular Biology, Cambridge, UK (1 message)
Purdah Period (2 messages)
Python scripts for RELION (1 message)
Relion 1.4 problem with ctffind4 (5 messages)
Relion 3D auto-refine memory estimation (1 message)
relion and gpu questions (8 messages)
RELION error - "Error in askMemory" (1 message)
RELION Euler angles (2 messages)
Relion: no output after noise spectra estimation (4 messages)
Relion: X11 librariies (1 message)
relion_star_compare (3 messages)
REMINDER - Vacancy for a scientific data curator (PDB/EMDB) at PDBe (1 message)
Research Scientist Position in the Simons Electron Microscopy Center at the New York Structural Biology Center (1 message)
ResMap hollow maps (2 messages)
ResMap in Single mode v/s Split Mode (1 message)
ResMap pre-whitening step (7 messages)
Single Precision Performance question (2 messages)
Splitting a 3D map (1 message)
Spring Symposium - Recorded Talks (1 message)
Spring Symposium Talks (1 message)
SR User Meeting 2016 - 7-8th September 2016 DLS, Harwell, UK (1 message)
Stuck at 2 Threads per MPI Process (1 message)
substraction a image from a map (3 messages)
Workable PEG concentrations in cryo-EM sample buffers? (2 messages)
Workshop announcement: Electron crystallography of 2D crystals of membrane proteins with 2DX, August 17-19, 2016. (1 message)
[3dem] De novo model building from medium-resolution cryo EM maps (2 messages)
[3dem] video on making graphene oxide grids (2 messages)

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Subject Sorted by Subject, Chronologically

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Date

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New Thread

2D classes particles look black

2D classes particles look black

Amrita Samanta <[log in to unmask]>

Wed, 18 May 2016 13:50:47 -0400

33 lines

Re: 2D classes particles look black

Ludovic Renault <[log in to unmask]>

Wed, 18 May 2016 20:26:40 +0200

53 lines

Re: 2D classes particles look black

Axel Brilot <[log in to unmask]>

Wed, 18 May 2016 14:04:54 -0700

79 lines

Re: 2D classes particles look black

Amrita Samanta <[log in to unmask]>

Thu, 19 May 2016 09:35:52 -0400

70 lines

Re: 2D classes particles look black

Sjors Scheres <[log in to unmask]>

Thu, 19 May 2016 16:15:25 +0100

59 lines

New Thread

CCP-EM Spring Symposium - Live stream

CCP-EM Spring Symposium - Live stream

Tom Burnley <[log in to unmask]>

Mon, 9 May 2016 11:40:42 +0100

62 lines

New Thread

CCP-EM Spring Symposium - live streaming now on

CCP-EM Spring Symposium - live streaming now on

Tom Burnley <[log in to unmask]>

Mon, 9 May 2016 14:27:06 +0100

59 lines

New Thread

CCP-EM Spring Symposium Day Two

CCP-EM Spring Symposium Day Two

Tom Burnley <[log in to unmask]>

Tue, 10 May 2016 09:11:18 +0100

59 lines

New Thread

Compiling Relion 1.4 single precision

Compiling Relion 1.4 single precision

Kao, Yen-Hong <[log in to unmask]>

Tue, 10 May 2016 14:02:16 +0000

20 lines

New Thread

continue old run takes a long time to start

continue old run takes a long time to start

Thomas Bausewein <[log in to unmask]>

Tue, 24 May 2016 18:25:02 +0200

40 lines

Re: continue old run takes a long time to start

Sjors Scheres <[log in to unmask]>

Wed, 25 May 2016 08:35:36 +0100

61 lines

New Thread

Cryo-EM Postdoctoral Position in Oxford to study Molecular mechanisms of DNA interstrand crosslink repair.

Cryo-EM Postdoctoral Position in Oxford to study Molecular mechanisms of DNA interstrand crosslink repair.

Martin Cohn <[log in to unmask]>

Tue, 24 May 2016 09:59:31 +0000

159 lines

New Thread

ctffind error?

ctffind error?

Scott Cohen <[log in to unmask]>

Sat, 7 May 2016 02:54:51 +0000

166 lines

Re: ctffind error?

Sjors Scheres <[log in to unmask]>

Sat, 7 May 2016 11:44:46 +0100

51 lines

New Thread

Data processing of high defocus data

Data processing of high defocus data

Reza Khayat <[log in to unmask]>

Wed, 25 May 2016 00:12:57 +0000

115 lines

Re: Data processing of high defocus data

Sjors Scheres <[log in to unmask]>

Wed, 25 May 2016 08:34:19 +0100

56 lines

Re: Data processing of high defocus data

Reza Khayat <[log in to unmask]>

Wed, 25 May 2016 13:02:09 +0000

48 lines

New Thread

De novo model building from medium-resolution cryo EM maps

De novo model building from medium-resolution cryo EM maps

Grigory Sharov <[log in to unmask]>

Mon, 23 May 2016 18:16:10 +0200

76 lines

New Thread

EMBO Practical Course: Cryo-Electron Microscopy and 3D Image Processing 2016

EMBO Practical Course: Cryo-Electron Microscopy and 3D Image Processing 2016

Carsten Sachse <[log in to unmask]>

Mon, 2 May 2016 17:28:33 +0200

42 lines

EMBO Practical Course: Cryo-Electron Microscopy and 3D Image Processing 2016

Carsten Sachse <[log in to unmask]>

Tue, 3 May 2016 09:46:21 +0200

84 lines

New Thread

ftlk complaining about X11 lib

Re: ftlk complaining about X11 lib

Jiang,Qiu-Xing <[log in to unmask]>

Thu, 12 May 2016 19:59:06 +0000

82 lines

Re: ftlk complaining about X11 lib

Sjors Scheres <[log in to unmask]>

Fri, 13 May 2016 08:17:17 +0100

100 lines

Re: ftlk complaining about X11 lib

Jiang,Qiu-Xing <[log in to unmask]>

Fri, 13 May 2016 11:57:08 +0000

115 lines

Re: ftlk complaining about X11 lib

Jiang,Qiu-Xing <[log in to unmask]>

Wed, 18 May 2016 14:49:13 +0000

125 lines

Re: ftlk complaining about X11 lib

Sjors Scheres <[log in to unmask]>

Wed, 18 May 2016 16:17:59 +0100

136 lines

Re: ftlk complaining about X11 lib

Jiang,Qiu-Xing <[log in to unmask]>

Wed, 18 May 2016 15:42:00 +0000

178 lines

Re: ftlk complaining about X11 lib

Adam Huffman <[log in to unmask]>

Fri, 20 May 2016 09:51:55 +0100

183 lines

New Thread

Group leader position call in Integrated Structural Biology, Strasbourg

Group leader position call in Integrated Structural Biology, Strasbourg

Bruno KLAHOLZ <[log in to unmask]>

Fri, 13 May 2016 16:20:22 +0000

387 lines

New Thread

Hands-On Workshop on Cryo-EM based Atomic Modeling

Hands-On Workshop on Cryo-EM based Atomic Modeling

Gunnar Schroeder <[log in to unmask]>

Mon, 30 May 2016 16:25:52 +0200

68 lines

New Thread

Improved Worldwide Support for wwPDB Deposition, Validation, and Annotation

Improved Worldwide Support for wwPDB Deposition, Validation, and Annotation

Ardan Patwardhan <[log in to unmask]>

Wed, 25 May 2016 17:23:52 +0100

84 lines

New Thread

micrograph_id out of range

micrograph_id out of range

Xabier Agirrezabala <[log in to unmask]>

Tue, 3 May 2016 15:05:50 +0100

17 lines

Re: micrograph_id out of range

Paolo Swuec <[log in to unmask]>

Tue, 3 May 2016 14:13:14 +0000

37 lines

New Thread

more troubles compiling relion1.4 on mac

Re: more troubles compiling relion1.4 on mac

Mike Strauss <[log in to unmask]>

Fri, 20 May 2016 09:22:39 +0200

182 lines

New Thread

MPI vs. pthreads and memory usage, --j behavior?

MPI vs. pthreads and memory usage, --j behavior?

Ryan Novosielski <[log in to unmask]>

Wed, 25 May 2016 19:57:02 +0100

48 lines

New Thread

New NMR and 3DEM Validation Reports for Archived PDB Structures

New NMR and 3DEM Validation Reports for Archived PDB Structures

Ardan Patwardhan <[log in to unmask]>

Fri, 6 May 2016 08:05:13 +0100

127 lines

New Thread

Only 1 particles in group

Only 1 particles in group

Fuxing Zeng <[log in to unmask]>

Sat, 28 May 2016 20:36:07 +0100

26 lines

New Thread

PDRA position available

PDRA position available

Neil Ranson <[log in to unmask]>

Fri, 13 May 2016 17:06:28 +0000

464 lines

New Thread

phase-flipped only images processing

phase-flipped only images processing

Tat Cheng <[log in to unmask]>

Tue, 31 May 2016 17:46:07 +0100

23 lines

New Thread

picking with templates

picking with templates

Reginald McNulty <[log in to unmask]>

Mon, 23 May 2016 09:20:03 -0700

23 lines

Re: picking with templates

Sjors Scheres <[log in to unmask]>

Mon, 23 May 2016 17:25:09 +0100

41 lines

Re: picking with templates

Kai Zhang <[log in to unmask]>

Mon, 23 May 2016 17:42:46 +0100

51 lines

Re: picking with templates

Jose Miguel de la Rosa Trevin <[log in to unmask]>

Mon, 23 May 2016 18:34:38 +0200

148 lines

New Thread

Position combining hard X-ray tomography with electron tomography to study neurodegenerative decease

Position combining hard X-ray tomography with electron tomography to study neurodegenerative decease

Schertler Gebhard (PSI) <[log in to unmask]>

Tue, 3 May 2016 07:40:54 +0000

158 lines

New Thread

Post-doc position at Leeds University, UK

Post-doc position at Leeds University, UK

Tom Burnley <[log in to unmask]>

Wed, 4 May 2016 12:10:26 +0100

90 lines

New Thread

Post-doctoral position to study glutamate receptors at the MRC LMB Cambridge

Post-doctoral position to study glutamate receptors at the MRC LMB Cambridge

Ingo Greger <[log in to unmask]>

Tue, 24 May 2016 11:32:56 +0100

63 lines

New Thread

Post-doctoral positions at IISER-TVM in Structural Molecular Biology.

Post-doctoral positions at IISER-TVM in Structural Molecular Biology.

Ramanathan Natesh <[log in to unmask]>

Sat, 7 May 2016 16:50:59 +0000

155 lines

New Thread

PostDoc (x2) in cryo-EM in London, UK

PostDoc (x2) in cryo-EM in London, UK

Alessandro Vannini <[log in to unmask]>

Thu, 26 May 2016 10:57:10 +0100

84 lines

New Thread

Postdoctoral Fellow (Structural Biology Algorithm Developer) - Berkeley Lab

Postdoctoral Fellow (Structural Biology Algorithm Developer) - Berkeley Lab

Rasool Yousufzai <[log in to unmask]>

Thu, 5 May 2016 20:05:35 +0100

135 lines

New Thread

Postdoctoral position MRC Laboratory of Molecular Biology, Cambridge, UK

Postdoctoral position MRC Laboratory of Molecular Biology, Cambridge, UK

Andrew Carter <[log in to unmask]>

Thu, 5 May 2016 17:41:05 +0100

97 lines

New Thread

Purdah Period

Purdah Period

Tom Burnley <[log in to unmask]>

Tue, 24 May 2016 10:19:12 +0100

73 lines

Re: Purdah Period

Ian Tickle <[log in to unmask]>

Tue, 24 May 2016 11:01:47 +0100

86 lines

New Thread

Python scripts for RELION

Python scripts for RELION

Juha Huiskonen <[log in to unmask]>

Wed, 11 May 2016 18:57:23 +0100

60 lines

New Thread

Relion 1.4 problem with ctffind4

Relion 1.4 problem with ctffind4

Jamie Riches <[log in to unmask]>

Mon, 30 May 2016 22:37:39 +0000

491 lines

Re: Relion 1.4 problem with ctffind4

Craig Yoshioka <[log in to unmask]>

Mon, 30 May 2016 23:01:55 +0000

569 lines

Re: Relion 1.4 problem with ctffind4

Martyn Winn <[log in to unmask]>

Mon, 30 May 2016 23:11:29 +0000

570 lines

Re: Relion 1.4 problem with ctffind4

Alexis Rohou <[log in to unmask]>

Mon, 30 May 2016 19:32:40 -0400

644 lines

Re: Relion 1.4 problem with ctffind4

Jamie Riches <[log in to unmask]>

Tue, 31 May 2016 05:30:44 +0000

645 lines

New Thread

Relion 3D auto-refine memory estimation

Relion 3D auto-refine memory estimation

Xianting Wang <[log in to unmask]>

Thu, 26 May 2016 16:01:31 +0100

25 lines

New Thread

relion and gpu questions

relion and gpu questions

giulia zanetti <[log in to unmask]>

Thu, 19 May 2016 19:47:48 +0100

111 lines

Re: relion and gpu questions

Sjors Scheres <[log in to unmask]>

Thu, 19 May 2016 20:23:24 +0100

127 lines

Re: relion and gpu questions

Neil Ranson <[log in to unmask]>

Thu, 19 May 2016 20:47:31 +0000

125 lines

Re: relion and gpu questions

Morris, Kyle <[log in to unmask]>

Sat, 21 May 2016 01:00:08 +0000

359 lines

Re: relion and gpu questions

Sjors Scheres <[log in to unmask]>

Sat, 21 May 2016 11:07:06 +0100

223 lines

Re: relion and gpu questions

Lu Gan <[log in to unmask]>

Sun, 22 May 2016 18:23:28 +0800

456 lines

Re: relion and gpu questions

Erik Lindahl <[log in to unmask]>

Sun, 22 May 2016 13:03:47 +0200

695 lines

Re: relion and gpu questions

Lu Gan <[log in to unmask]>

Sun, 22 May 2016 22:15:23 +0800

726 lines

New Thread

RELION error - "Error in askMemory"

Re: RELION error - "Error in askMemory"

Ray Y.-R. Wang <[log in to unmask]>

Thu, 19 May 2016 11:56:31 -0700

221 lines

New Thread

RELION Euler angles

RELION Euler angles

Stefano Trapani <[log in to unmask]>

Mon, 30 May 2016 17:20:20 +0200

1322 lines

Re: RELION Euler angles

David Dynerman <[log in to unmask]>

Tue, 31 May 2016 09:43:46 -0700

62 lines

New Thread

Relion: no output after noise spectra estimation

Relion: no output after noise spectra estimation

Manikandan KARUPPASAMY <[log in to unmask]>

Tue, 3 May 2016 15:52:00 +0200

41 lines

Re: Relion: no output after noise spectra estimation

Sjors Scheres <[log in to unmask]>

Tue, 3 May 2016 15:37:23 +0100

57 lines

Re: Relion: no output after noise spectra estimation

Manikandan KARUPPASAMY <[log in to unmask]>

Fri, 6 May 2016 09:52:20 +0200

63 lines

Re: Relion: no output after noise spectra estimation

Sjors Scheres <[log in to unmask]>

Fri, 6 May 2016 09:10:29 +0100

80 lines

New Thread

Relion: X11 librariies

Re: Relion: X11 librariies

Jiang,Qiu-Xing <[log in to unmask]>

Thu, 5 May 2016 12:52:34 +0000

71 lines

New Thread

relion_star_compare

relion_star_compare

Cristina Paulino <[log in to unmask]>

Tue, 10 May 2016 17:31:40 +0200

96 lines

Re: relion_star_compare

Sjors Scheres <[log in to unmask]>

Tue, 10 May 2016 19:12:40 +0100

59 lines

Re: relion_star_compare

Cristina Paulino <[log in to unmask]>

Wed, 11 May 2016 09:43:07 +0200

77 lines

New Thread

REMINDER - Vacancy for a scientific data curator (PDB/EMDB) at PDBe

REMINDER - Vacancy for a scientific data curator (PDB/EMDB) at PDBe

Ardan Patwardhan <[log in to unmask]>

Fri, 13 May 2016 11:21:33 +0100

100 lines

New Thread

Research Scientist Position in the Simons Electron Microscopy Center at the New York Structural Biology Center

Research Scientist Position in the Simons Electron Microscopy Center at the New York Structural Biology Center

William Rice <[log in to unmask]>

Thu, 26 May 2016 13:46:33 -0400

114 lines

New Thread

ResMap hollow maps

ResMap hollow maps

Jason Kaelber <[log in to unmask]>

Fri, 13 May 2016 20:55:14 +0100

25 lines

Re: ResMap hollow maps

Sjors Scheres <[log in to unmask]>

Fri, 13 May 2016 20:57:35 +0100

43 lines

New Thread

ResMap in Single mode v/s Split Mode

ResMap in Single mode v/s Split Mode

Joshua Lobo <[log in to unmask]>

Fri, 13 May 2016 16:58:10 +0100

30 lines

New Thread

ResMap pre-whitening step

ResMap pre-whitening step

Joshua Lobo <[log in to unmask]>

Wed, 11 May 2016 22:40:09 +0100

38 lines

Re: ResMap pre-whitening step

Sjors Scheres <[log in to unmask]>

Thu, 12 May 2016 08:21:21 +0100

56 lines

Re: ResMap pre-whitening step

Nazarov Sergey <[log in to unmask]>

Thu, 12 May 2016 08:04:30 +0000

59 lines

Re: ResMap pre-whitening step

Joshua Lobo <[log in to unmask]>

Thu, 12 May 2016 12:02:13 -0400

164 lines

Re: ResMap pre-whitening step

Grigory Sharov <[log in to unmask]>

Thu, 12 May 2016 18:20:08 +0200

235 lines

Re: ResMap pre-whitening step

Ludtke, Steven J <[log in to unmask]>

Thu, 12 May 2016 18:04:00 +0000

236 lines

Re: ResMap pre-whitening step

Nazarov Sergey <[log in to unmask]>

Thu, 12 May 2016 20:02:05 +0000

418 lines

New Thread

Single Precision Performance question

Single Precision Performance question

Kao, Yen-Hong <[log in to unmask]>

Wed, 11 May 2016 14:16:58 +0000

169 lines

Re: Single Precision Performance question

Sjors Scheres <[log in to unmask]>

Wed, 11 May 2016 19:25:03 +0100

60 lines

New Thread

Splitting a 3D map

Splitting a 3D map

Joshua Lobo <[log in to unmask]>

Mon, 23 May 2016 17:55:07 +0100

22 lines

New Thread

Spring Symposium - Recorded Talks

Spring Symposium - Recorded Talks

Tom Burnley <[log in to unmask]>

Tue, 10 May 2016 11:59:57 +0100

47 lines

New Thread

Spring Symposium Talks

Spring Symposium Talks

Tom Burnley <[log in to unmask]>

Tue, 24 May 2016 10:10:26 +0100

53 lines

New Thread

SR User Meeting 2016 - 7-8th September 2016 DLS, Harwell, UK

SR User Meeting 2016 - 7-8th September 2016 DLS, Harwell, UK

Tom Burnley <[log in to unmask]>

Wed, 18 May 2016 09:11:47 +0100

69 lines

New Thread

Stuck at 2 Threads per MPI Process

Re: Stuck at 2 Threads per MPI Process

Jiang,Qiu-Xing <[log in to unmask]>

Thu, 5 May 2016 13:10:04 +0000

249 lines

New Thread

substraction a image from a map

substraction a image from a map

Jianhao Cao <[log in to unmask]>

Mon, 23 May 2016 09:05:05 +0100

26 lines

Re: substraction a image from a map

Sjors Scheres <[log in to unmask]>

Mon, 23 May 2016 09:34:15 +0100

40 lines

Re: substraction a image from a map

C.J. <[log in to unmask]>

Tue, 24 May 2016 10:55:50 +0800

120 lines

New Thread

Workable PEG concentrations in cryo-EM sample buffers?

Workable PEG concentrations in cryo-EM sample buffers?

Nicholas Gao <[log in to unmask]>

Sun, 8 May 2016 14:59:23 -0400

55 lines

Re: Workable PEG concentrations in cryo-EM sample buffers?

Ariel Blocker <[log in to unmask]>

Sun, 8 May 2016 22:02:52 +0100

265 lines

New Thread

Workshop announcement: Electron crystallography of 2D crystals of membrane proteins with 2DX, August 17-19, 2016.

Workshop announcement: Electron crystallography of 2D crystals of membrane proteins with 2DX, August 17-19, 2016.

Henning Stahlberg <[log in to unmask]>

Wed, 11 May 2016 08:50:50 +0000

61 lines

New Thread

[3dem] De novo model building from medium-resolution cryo EM maps

Re: [3dem] De novo model building from medium-resolution cryo EM maps

John Rubinstein <[log in to unmask]>

Mon, 23 May 2016 14:24:51 -0400

196 lines

Re: [3dem] De novo model building from medium-resolution cryo EM maps

John Rubinstein <[log in to unmask]>

Mon, 23 May 2016 14:24:51 -0400

212 lines

New Thread

[3dem] video on making graphene oxide grids

Re: [3dem] video on making graphene oxide grids

Vera Leber <[log in to unmask]>

Wed, 25 May 2016 10:45:51 +0000

128 lines

Re: [3dem] video on making graphene oxide grids

Andreas Boland <[log in to unmask]>

Wed, 25 May 2016 12:56:40 +0100

22 lines

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