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December 2015


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Table of Contents:

a question on mask (1 message)
Autopick star cordinates format (3 messages)
Cluster hardware configuration. (6 messages)
Compile, link, install and run relion 1.4 under opensuse 13.1 on an AMD-opteron based cluster with an existing old openmpi installation and SGE queuing (1 message)
ctffind 4.0.17, bug-fix release (1 message)
Display beam-induced movement tracks on micrographs (2 messages)
EM facility assistant @ LMB (1 message)
Figure preparation: 2D projections + 2D classes + particles (4 messages)
fluctuating FSC curve (2 messages)
installation problem (5 messages)
limit rotational refinement angles (2 messages)
minimize computational costs (3 messages)
Movie refinement issue (1 message)
MTF for DE-20 @300kV (1 message)
nr_pool (2 messages)
on the meaning of fourier shell ofFSC (3 messages)
Opportunities for cryo soft X-ray microscopy at Diamond Light Source, UK (1 message)
parallel computing 3D CTF model of subtomograms (1 message)
readMRC: Image number # exceeds stack size # (2 messages)
Relion: 3d refinement with eo and limited iterations. (4 messages)
Relion: MaxValueProbabilityDistribution and LogLikeliContribution (8 messages)
relion_refine_mpi and memory_per_thread (7 messages)
Senior Laboratory Research Scientist - The Francis Crick Institute (1 message)
THE SEVENTH BRAZIL SCHOOL FOR SINGLE PARTICLE CRYO-EM (SECOND ANNOUNCEMENT) (1 message)
to join all star files after Extraction (2 messages)
Vacancy for a scientific data curator (PDB/EMDB) at PDBe (1 message)
[3dem] EM facility assistant @ LMB (1 message)
[3dem] [ccpem] on the meaning of fourier shell ofFSC (1 message)

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Subject Sorted by Subject, Chronologically

From

Date

Size

New Thread

a question on mask

a question on mask

Smith Liu <[log in to unmask]>

Mon, 28 Dec 2015 11:16:43 +0800

56 lines

New Thread

Autopick star cordinates format

Autopick star cordinates format

Joshua Lobo <[log in to unmask]>

Tue, 22 Dec 2015 16:59:59 +0000

23 lines

Re: Autopick star cordinates format

Robert McLeod <[log in to unmask]>

Tue, 22 Dec 2015 17:51:13 +0000

56 lines

Re: Autopick star cordinates format

Ludtke, Steven J <[log in to unmask]>

Wed, 23 Dec 2015 00:33:56 +0000

64 lines

New Thread

Cluster hardware configuration.

Cluster hardware configuration.

David Bhella <[log in to unmask]>

Wed, 9 Dec 2015 11:16:52 +0000

42 lines

Re: Cluster hardware configuration.

Craig Yoshioka <[log in to unmask]>

Wed, 9 Dec 2015 15:07:17 +0000

97 lines

Re: Cluster hardware configuration.

Wolfgang Lugmayr <[log in to unmask]>

Wed, 9 Dec 2015 16:17:40 +0100

93 lines

Re: Cluster hardware configuration.

Dimitry Tegunov <[log in to unmask]>

Wed, 9 Dec 2015 16:40:26 +0000

21 lines

Re: Cluster hardware configuration.

Sjors Scheres <[log in to unmask]>

Wed, 9 Dec 2015 22:26:39 -0000

96 lines

Re: Cluster hardware configuration.

Morris, Kyle <[log in to unmask]>

Thu, 10 Dec 2015 12:57:46 +0000

59 lines

New Thread

Compile, link, install and run relion 1.4 under opensuse 13.1 on an AMD-opteron based cluster with an existing old openmpi installation and SGE queuing

Compile, link, install and run relion 1.4 under opensuse 13.1 on an AMD-opteron based cluster with an existing old openmpi installation and SGE queuing

Michael Gajhede <[log in to unmask]>

Tue, 1 Dec 2015 14:48:04 +0000

416 lines

New Thread

ctffind 4.0.17, bug-fix release

ctffind 4.0.17, bug-fix release

Alexis Rohou <[log in to unmask]>

Thu, 17 Dec 2015 21:09:31 -0500

37 lines

New Thread

Display beam-induced movement tracks on micrographs

Display beam-induced movement tracks on micrographs

R. Shayan <[log in to unmask]>

Wed, 2 Dec 2015 14:48:59 +0000

22 lines

Re: Display beam-induced movement tracks on micrographs

Sjors Scheres <[log in to unmask]>

Wed, 2 Dec 2015 19:12:43 -0000

44 lines

New Thread

EM facility assistant @ LMB

EM facility assistant @ LMB

Sjors Scheres <[log in to unmask]>

Fri, 18 Dec 2015 20:37:40 -0000

33 lines

New Thread

Figure preparation: 2D projections + 2D classes + particles

Re: Figure preparation: 2D projections + 2D classes + particles

Maciej Jagielnicki <[log in to unmask]>

Tue, 1 Dec 2015 17:06:25 +0000

25 lines

Re: Figure preparation: 2D projections + 2D classes + particles

Ricardo Righetto <[log in to unmask]>

Wed, 2 Dec 2015 10:40:52 +0100

89 lines

Re: Figure preparation: 2D projections + 2D classes + particles

Ludtke, Steven J <[log in to unmask]>

Wed, 2 Dec 2015 14:39:04 +0000

167 lines

Re: Figure preparation: 2D projections + 2D classes + particles

Maciej Jagielnicki <[log in to unmask]>

Fri, 4 Dec 2015 23:11:45 +0000

38 lines

New Thread

fluctuating FSC curve

fluctuating FSC curve

李智海 <[log in to unmask]>

Fri, 11 Dec 2015 23:59:44 +0800

770 lines

Re: fluctuating FSC curve

Ludovic Renault <[log in to unmask]>

Fri, 11 Dec 2015 16:30:12 +0000

813 lines

New Thread

installation problem

installation problem

Wei Zhang <[log in to unmask]>

Fri, 11 Dec 2015 08:54:10 -0600

121 lines

Re: installation problem

Sjors Scheres <[log in to unmask]>

Sat, 12 Dec 2015 10:22:13 -0000

78 lines

Re: installation problem

Wei Zhang <[log in to unmask]>

Sun, 13 Dec 2015 21:33:46 -0600

258 lines

Re: installation problem

Sjors Scheres <[log in to unmask]>

Mon, 14 Dec 2015 08:35:20 -0000

135 lines

Re: installation problem

Wolfgang Lugmayr <[log in to unmask]>

Mon, 14 Dec 2015 11:01:01 +0100

212 lines

New Thread

limit rotational refinement angles

limit rotational refinement angles

Franken, L.E. <[log in to unmask]>

Fri, 4 Dec 2015 09:53:26 +0100

40 lines

Re: limit rotational refinement angles

Sjors Scheres <[log in to unmask]>

Sat, 5 Dec 2015 17:39:25 -0000

50 lines

New Thread

minimize computational costs

minimize computational costs

Yan Zhang <[log in to unmask]>

Fri, 25 Dec 2015 09:59:51 -0500

52 lines

Re: minimize computational costs

Sjors Scheres <[log in to unmask]>

Sun, 27 Dec 2015 12:15:36 -0000

47 lines

Re: minimize computational costs

Yan Zhang <[log in to unmask]>

Sun, 27 Dec 2015 11:59:11 -0500

2024 lines

New Thread

Movie refinement issue

Re: Movie refinement issue

Simonas Masiulis <[log in to unmask]>

Thu, 10 Dec 2015 18:43:46 +0000

268 lines

New Thread

MTF for DE-20 @300kV

MTF for DE-20 @300kV

Sjors Scheres <[log in to unmask]>

Wed, 2 Dec 2015 09:54:29 +0000

26 lines

New Thread

nr_pool

nr_pool

Jianhao Cao <[log in to unmask]>

Sun, 20 Dec 2015 18:20:14 +0000

44 lines

Re: nr_pool

Sjors Scheres <[log in to unmask]>

Sun, 27 Dec 2015 12:17:01 -0000

61 lines

New Thread

on the meaning of fourier shell ofFSC

on the meaning of fourier shell ofFSC

Smith Lee <[log in to unmask]>

Wed, 9 Dec 2015 01:32:16 +0000

24 lines

Re: on the meaning of fourier shell ofFSC

Sjors Scheres <[log in to unmask]>

Wed, 9 Dec 2015 22:53:17 -0000

31 lines

Re: on the meaning of fourier shell ofFSC

Marin van Heel <[log in to unmask]>

Thu, 10 Dec 2015 14:49:35 +0100

239 lines

New Thread

Opportunities for cryo soft X-ray microscopy at Diamond Light Source, UK

Opportunities for cryo soft X-ray microscopy at Diamond Light Source, UK

Liz Duke <[log in to unmask]>

Tue, 15 Dec 2015 09:57:22 +0000

238 lines

New Thread

parallel computing 3D CTF model of subtomograms

parallel computing 3D CTF model of subtomograms

Hongli Hu <[log in to unmask]>

Thu, 17 Dec 2015 12:17:15 -0500

36 lines

New Thread

readMRC: Image number # exceeds stack size #

readMRC: Image number # exceeds stack size #

Maciej Jagielnicki <[log in to unmask]>

Fri, 18 Dec 2015 20:36:19 +0000

48 lines

Re: readMRC: Image number # exceeds stack size #

Sjors Scheres <[log in to unmask]>

Fri, 18 Dec 2015 21:22:01 -0000

69 lines

New Thread

Relion: 3d refinement with eo and limited iterations.

Relion: 3d refinement with eo and limited iterations.

Morado, Dustin R <[log in to unmask]>

Sun, 13 Dec 2015 04:20:15 +0000

18 lines

Re: Relion: 3d refinement with eo and limited iterations.

Ludovic Renault <[log in to unmask]>

Sun, 13 Dec 2015 08:27:55 +0000

70 lines

Re: Relion: 3d refinement with eo and limited iterations.

Morado, Dustin R <[log in to unmask]>

Sun, 13 Dec 2015 17:11:49 +0000

37 lines

Re: Relion: 3d refinement with eo and limited iterations.

Sjors Scheres <[log in to unmask]>

Mon, 14 Dec 2015 08:33:36 -0000

91 lines

New Thread

Relion: MaxValueProbabilityDistribution and LogLikeliContribution

Relion: MaxValueProbabilityDistribution and LogLikeliContribution

Morris, Kyle <[log in to unmask]>

Thu, 10 Dec 2015 15:18:58 +0000

7809 lines

Re: Relion: MaxValueProbabilityDistribution and LogLikeliContribution

Tat Cheung Cheng <[log in to unmask]>

Thu, 10 Dec 2015 14:56:38 -0500

7882 lines

Re: Relion: MaxValueProbabilityDistribution and LogLikeliContribution

Sjors Scheres <[log in to unmask]>

Thu, 10 Dec 2015 21:11:44 -0000

99 lines

Re: Relion: MaxValueProbabilityDistribution and LogLikeliContribution

Sjors Scheres <[log in to unmask]>

Thu, 10 Dec 2015 21:22:33 -0000

111 lines

Re: Relion: MaxValueProbabilityDistribution and LogLikeliContribution

Morris, Kyle <[log in to unmask]>

Fri, 11 Dec 2015 10:33:18 +0000

88 lines

Re: Relion: MaxValueProbabilityDistribution and LogLikeliContribution

Sjors Scheres <[log in to unmask]>

Sat, 12 Dec 2015 10:24:51 -0000

147 lines

Re: Relion: MaxValueProbabilityDistribution and LogLikeliContribution

Morris, Kyle <[log in to unmask]>

Mon, 14 Dec 2015 13:35:16 +0000

9219 lines

Re: Relion: MaxValueProbabilityDistribution and LogLikeliContribution

Sjors Scheres <[log in to unmask]>

Mon, 14 Dec 2015 20:51:00 -0000

189 lines

New Thread

relion_refine_mpi and memory_per_thread

relion_refine_mpi and memory_per_thread

Sargis Dallakyan <[log in to unmask]>

Thu, 10 Dec 2015 17:13:39 +0000

32 lines

Re: relion_refine_mpi and memory_per_thread

Craig Yoshioka <[log in to unmask]>

Thu, 10 Dec 2015 17:59:08 +0000

102 lines

Re: relion_refine_mpi and memory_per_thread

Sargis Dallakyan <[log in to unmask]>

Thu, 10 Dec 2015 13:29:01 -0500

263 lines

Re: relion_refine_mpi and memory_per_thread

Craig Yoshioka <[log in to unmask]>

Thu, 10 Dec 2015 18:34:41 +0000

234 lines

Re: relion_refine_mpi and memory_per_thread

Benoît Zuber <[log in to unmask]>

Thu, 10 Dec 2015 20:30:38 +0000

243 lines

Re: relion_refine_mpi and memory_per_thread

Sargis Dallakyan <[log in to unmask]>

Thu, 10 Dec 2015 16:10:52 -0500

421 lines

Re: relion_refine_mpi and memory_per_thread

Sjors Scheres <[log in to unmask]>

Thu, 10 Dec 2015 21:13:48 -0000

143 lines

New Thread

Senior Laboratory Research Scientist - The Francis Crick Institute

Senior Laboratory Research Scientist - The Francis Crick Institute

Alessandro Costa <[log in to unmask]>

Fri, 4 Dec 2015 16:54:08 +0000

215 lines

New Thread

THE SEVENTH BRAZIL SCHOOL FOR SINGLE PARTICLE CRYO-EM (SECOND ANNOUNCEMENT)

THE SEVENTH BRAZIL SCHOOL FOR SINGLE PARTICLE CRYO-EM (SECOND ANNOUNCEMENT)

Marin van Heel <[log in to unmask]>

Fri, 18 Dec 2015 16:30:47 +0100

1544 lines

New Thread

to join all star files after Extraction

to join all star files after Extraction

Eaazhisai KANDIAH <[log in to unmask]>

Fri, 18 Dec 2015 08:58:50 +0100

230 lines

Re: to join all star files after Extraction

Sjors Scheres <[log in to unmask]>

Fri, 18 Dec 2015 20:23:35 -0000

247 lines

New Thread

Vacancy for a scientific data curator (PDB/EMDB) at PDBe

Vacancy for a scientific data curator (PDB/EMDB) at PDBe

Gerard Kleywegt <[log in to unmask]>

Tue, 15 Dec 2015 15:36:39 +0000

37 lines

New Thread

[3dem] EM facility assistant @ LMB

[3dem] EM facility assistant @ LMB

Sjors Scheres <[log in to unmask]>

Fri, 18 Dec 2015 20:37:40 -0000

38 lines

New Thread

[3dem] [ccpem] on the meaning of fourier shell ofFSC

Re: [3dem] [ccpem] on the meaning of fourier shell ofFSC

Marin van Heel <[log in to unmask]>

Thu, 10 Dec 2015 14:49:35 +0100

256 lines

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