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November 2015


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Table of Contents:

3D classification in Relion 1.4 got stuck right before Maximization (4 messages)
about bg_radius value (2 messages)
alignparts_lmbfgs bug fix (1 message)
crashes with MPI_Send errors in RELION-1.4 (1 message)
Cryo-EM core facility manager position at Van Andel Research Institute (1 message)
Disk space requirements (1 message)
Disk space requirements. (2 messages)
EMDataBank Map Challenge News (1 message)
Faculty position in structural biology (1 message)
Figure preparation: 2D projections + 2D classes + particles (6 messages)
grouping large data sets (5 messages)
Image number ## exceeds stack size ## (2 messages)
isolate protein density from cryo EM map (3 messages)
motioncorr and particle polishing (3 messages)
Movie refinement issue (3 messages)
MPI-related problem with Relion 1.4 and SGI MPI (3 messages)
on vieweing mrc file and coresponding PDB by coot (1 message)
one question on relion (2 messages)
Particle extraction step: src/image.cpp line: 80 error (2 messages)
Post Autopick cleaning procedure in Relion 1.3 (2 messages)
post-processing in relion 1.4: memory allocation and seg fault (2 messages)
Postprocessing with mtf correction (1 message)
RELION 3D classification and 3D autorefine (7 messages)
Relion normalization (2 messages)
Relion Stack created with autopicked particles (7 messages)
Relion symetry option for auto-refine step (1 message)
relion_reconstrcut with orientation parameter got from other software (3 messages)
Signal subtraction in Relion (3 messages)
supercomputer time available for the map challenge (1 message)
Tutorial: sub-tomogram averaging in RELION (2 messages)
[ccpem] Particle extraction step: src/image.cpp line: 80 error (1 message)
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Subject Sorted by Subject, Most Recent First

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Date

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New Thread

3D classification in Relion 1.4 got stuck right before Maximization

Re: 3D classification in Relion 1.4 got stuck right before Maximization

Li, Zongli

Wed, 11 Nov 2015 09:56:14 -0500

186 lines

Re: 3D classification in Relion 1.4 got stuck right before Maximization

Sjors Scheres

Wed, 11 Nov 2015 08:26:30 -0000

159 lines

Re: 3D classification in Relion 1.4 got stuck right before Maximization

Sjors Scheres

Sat, 7 Nov 2015 08:48:06 -0000

62 lines

3D classification in Relion 1.4 got stuck right before Maximization

Li, Zongli

Fri, 6 Nov 2015 16:41:52 -0500

967 lines
New Thread

about bg_radius value

Re: about bg_radius value

Xiaodi Yu

Tue, 3 Nov 2015 09:45:11 -0800

39 lines

about bg_radius value

Jianhao Cao

Tue, 3 Nov 2015 17:29:30 +0000

23 lines
New Thread

alignparts_lmbfgs bug fix

alignparts_lmbfgs bug fix

John Rubinstein

Thu, 19 Nov 2015 15:34:51 -0500

33 lines
New Thread

crashes with MPI_Send errors in RELION-1.4

Re: crashes with MPI_Send errors in RELION-1.4

Wolfgang Lugmayr

Mon, 2 Nov 2015 16:47:52 +0100

50 lines
New Thread

Cryo-EM core facility manager position at Van Andel Research Institute

Cryo-EM core facility manager position at Van Andel Research Institute

Martyn Winn

Fri, 27 Nov 2015 20:30:51 +0000

1266 lines
New Thread

Disk space requirements

Disk space requirements

Ian Tickle

Wed, 11 Nov 2015 16:40:36 +0000

21 lines
New Thread

Disk space requirements.

Re: Disk space requirements.

Sjors Scheres

Wed, 11 Nov 2015 20:39:27 -0000

53 lines

Disk space requirements.

Ian Tickle

Wed, 11 Nov 2015 16:57:05 +0000

45 lines
New Thread

EMDataBank Map Challenge News

EMDataBank Map Challenge News

Cathy Lawson

Mon, 9 Nov 2015 09:56:59 -0500

100 lines
New Thread

Faculty position in structural biology

Faculty position in structural biology

Leonid Sazanov

Tue, 3 Nov 2015 18:43:06 +0000

25 lines
New Thread

Figure preparation: 2D projections + 2D classes + particles

Re: Figure preparation: 2D projections + 2D classes + particles

Franken, L.E.

Thu, 26 Nov 2015 07:52:08 +0100

202 lines

Re: Figure preparation: 2D projections + 2D classes + particles

Ludovic Renault

Wed, 25 Nov 2015 10:17:21 +0000

169 lines

Re: Figure preparation: 2D projections + 2D classes + particles

Maciej Jagielnicki

Tue, 24 Nov 2015 15:30:11 +0000

67 lines

Re: Figure preparation: 2D projections + 2D classes + particles

Paolo Swuec

Fri, 20 Nov 2015 17:28:26 +0000

61 lines

Re: Figure preparation: 2D projections + 2D classes + particles

Sjors Scheres

Fri, 20 Nov 2015 17:35:27 +0000

42 lines

Figure preparation: 2D projections + 2D classes + particles

Maciej Jagielnicki

Fri, 20 Nov 2015 16:11:51 +0000

29 lines
New Thread

grouping large data sets

Re: grouping large data sets

Morris, Kyle

Mon, 23 Nov 2015 10:06:00 +0000

265 lines

Re: grouping large data sets

Benoît Zuber

Mon, 23 Nov 2015 10:01:09 +0000

189 lines

Re: grouping large data sets

Aufderheide, Antje

Mon, 23 Nov 2015 09:38:52 +0000

217 lines

Re: grouping large data sets

Ludovic Renault

Fri, 20 Nov 2015 15:16:55 +0000

116 lines

grouping large data sets

Aufderheide, Antje

Fri, 20 Nov 2015 15:08:37 +0000

91 lines
New Thread

Image number ## exceeds stack size ##

Re: Image number ## exceeds stack size ##

Ludovic Renault

Wed, 11 Nov 2015 08:52:23 +0000

85 lines

Image number ## exceeds stack size ##

Breylon Riley

Tue, 10 Nov 2015 21:15:55 -0500

60 lines
New Thread

isolate protein density from cryo EM map

Re: isolate protein density from cryo EM map

Benoît Zuber

Thu, 12 Nov 2015 07:20:55 +0000

40 lines

Re: isolate protein density from cryo EM map

Xiaodi Yu

Wed, 11 Nov 2015 23:01:18 -0800

45 lines

isolate protein density from cryo EM map

Tofayel Ahmed

Thu, 12 Nov 2015 05:36:59 +0000

27 lines
New Thread

motioncorr and particle polishing

Re: motioncorr and particle polishing

Leonid Sazanov

Tue, 3 Nov 2015 18:24:42 +0000

33 lines

Re: motioncorr and particle polishing

Sjors Scheres

Tue, 3 Nov 2015 08:34:18 -0000

66 lines

motioncorr and particle polishing

Leonid Sazanov

Mon, 2 Nov 2015 19:01:59 +0000

40 lines
New Thread

Movie refinement issue

Re: Movie refinement issue

Sjors Scheres

Thu, 26 Nov 2015 11:20:29 -0000

70 lines

Re: Movie refinement issue

Sjors Scheres

Wed, 25 Nov 2015 21:29:38 -0000

73 lines

Movie refinement issue

Simonas Masiulis

Wed, 25 Nov 2015 18:57:16 +0000

32 lines
New Thread

MPI-related problem with Relion 1.4 and SGI MPI

Re: MPI-related problem with Relion 1.4 and SGI MPI

Robert Byrne

Tue, 17 Nov 2015 14:18:22 +0100

80 lines

Re: MPI-related problem with Relion 1.4 and SGI MPI

Sjors Scheres

Mon, 9 Nov 2015 16:30:26 +0000

49 lines

MPI-related problem with Relion 1.4 and SGI MPI

Robert Byrne

Mon, 9 Nov 2015 13:34:47 +0100

49 lines
New Thread

on vieweing mrc file and coresponding PDB by coot

on vieweing mrc file and coresponding PDB by coot

Smith Liu

Mon, 2 Nov 2015 14:54:56 +0800

47 lines
New Thread

one question on relion

Re: one question on relion

Sjors Scheres

Fri, 20 Nov 2015 09:13:28 +0000

60 lines

one question on relion

Smith Liu

Fri, 20 Nov 2015 10:37:11 +0800

60 lines
New Thread

Particle extraction step: src/image.cpp line: 80 error

Re: Particle extraction step: src/image.cpp line: 80 error

Xiaodi Yu

Tue, 10 Nov 2015 01:37:52 -0800

65 lines

Particle extraction step: src/image.cpp line: 80 error

Breylon Riley

Tue, 10 Nov 2015 02:16:39 -0500

147 lines
New Thread

Post Autopick cleaning procedure in Relion 1.3

Re: Post Autopick cleaning procedure in Relion 1.3

Sjors Scheres

Tue, 3 Nov 2015 20:21:08 -0000

61 lines

Post Autopick cleaning procedure in Relion 1.3

Joshua Lobo

Tue, 3 Nov 2015 19:23:31 +0000

39 lines
New Thread

post-processing in relion 1.4: memory allocation and seg fault

Re: post-processing in relion 1.4: memory allocation and seg fault

Sjors Scheres

Thu, 12 Nov 2015 19:41:47 -0000

158 lines

Re: post-processing in relion 1.4: memory allocation and seg fault

Alexander Shkumatov

Thu, 12 Nov 2015 15:15:06 +0100

422 lines
New Thread

Postprocessing with mtf correction

Postprocessing with mtf correction

Huy Bui

Sun, 8 Nov 2015 18:50:21 -0500

45 lines
New Thread

RELION 3D classification and 3D autorefine

Re: RELION 3D classification and 3D autorefine

Joshua Lobo

Mon, 23 Nov 2015 09:03:04 -0500

261 lines

Re: RELION 3D classification and 3D autorefine

Sjors Scheres

Mon, 23 Nov 2015 09:00:38 -0000

99 lines

Re: RELION 3D classification and 3D autorefine

Martyn Winn

Sun, 22 Nov 2015 22:35:25 +0000

55 lines

Re: RELION 3D classification and 3D autorefine

Sjors Scheres

Fri, 20 Nov 2015 17:34:31 +0000

58 lines

Re: RELION 3D classification and 3D autorefine

Martyn Winn

Fri, 20 Nov 2015 15:15:29 +0000

146 lines

Re: RELION 3D classification and 3D autorefine

Ludovic Renault

Fri, 20 Nov 2015 14:54:25 +0000

75 lines

RELION 3D classification and 3D autorefine

Joshua Lobo

Fri, 20 Nov 2015 14:41:15 +0000

25 lines
New Thread

Relion normalization

Re: Relion normalization

Sjors Scheres

Mon, 2 Nov 2015 15:32:06 -0000

58 lines

Relion normalization

hugomh

Mon, 2 Nov 2015 14:39:02 +0100

39 lines
New Thread

Relion Stack created with autopicked particles

Re: Relion Stack created with autopicked particles

Ludtke, Steven J

Tue, 10 Nov 2015 22:57:31 +0000

325 lines

Re: Relion Stack created with autopicked particles

Liz Montabana

Tue, 10 Nov 2015 14:21:32 -0800

154 lines

Re: Relion Stack created with autopicked particles

Ludovic Renault

Tue, 10 Nov 2015 22:12:20 +0000

163 lines

Re: Relion Stack created with autopicked particles

Joshua Lobo

Tue, 10 Nov 2015 16:30:25 -0500

129 lines

Re: Relion Stack created with autopicked particles

Oliver Clarke

Tue, 10 Nov 2015 09:35:41 -0500

97 lines

Re: Relion Stack created with autopicked particles

Ludovic Renault

Tue, 10 Nov 2015 14:30:54 +0000

75 lines

Relion Stack created with autopicked particles

Joshua Lobo

Tue, 10 Nov 2015 14:14:37 +0000

25 lines
New Thread

Relion symetry option for auto-refine step

Relion symetry option for auto-refine step

Joshua Lobo

Wed, 11 Nov 2015 20:51:16 +0000

19 lines
New Thread

relion_reconstrcut with orientation parameter got from other software

Re: relion_reconstrcut with orientation parameter got from other software

Huy Bui

Fri, 20 Nov 2015 13:48:58 -0500

120 lines

Re: relion_reconstrcut with orientation parameter got from other software

Sjors Scheres

Fri, 20 Nov 2015 09:15:06 +0000

54 lines

relion_reconstrcut with orientation parameter got from other software

Chuang Liu

Thu, 19 Nov 2015 21:20:37 +0000

43 lines
New Thread

Signal subtraction in Relion

Re: Signal subtraction in Relion

Basil Greber

Sun, 15 Nov 2015 10:46:46 -0800

266 lines

Re: Signal subtraction in Relion

Sjors Scheres

Sat, 14 Nov 2015 08:51:10 -0000

106 lines

Signal subtraction in Relion

Basil Greber

Fri, 13 Nov 2015 10:28:52 -0800

3705 lines
New Thread

supercomputer time available for the map challenge

supercomputer time available for the map challenge

Cathy Lawson

Tue, 17 Nov 2015 11:13:35 -0500

152 lines
New Thread

Tutorial: sub-tomogram averaging in RELION

Re: Tutorial: sub-tomogram averaging in RELION

Sjors Scheres

Sat, 21 Nov 2015 08:47:51 -0000

100 lines

Tutorial: sub-tomogram averaging in RELION

Sjors Scheres

Thu, 19 Nov 2015 13:50:16 +0000

38 lines
New Thread

[ccpem] Particle extraction step: src/image.cpp line: 80 error

Fwd: [ccpem] Particle extraction step: src/image.cpp line: 80 error

Grigory Sharov

Tue, 10 Nov 2015 12:18:28 +0100

245 lines

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