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November 2015


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List of Contributors:

Alexander Shkumatov (1 message)
Aufderheide, Antje (2 messages)
Basil Greber (2 messages)
Benoît Zuber (2 messages)
Breylon Riley (2 messages)
Cathy Lawson (2 messages)
Chuang Liu (1 message)
Franken, L.E. (1 message)
Grigory Sharov (1 message)
hugomh (1 message)
Huy Bui (2 messages)
Ian Tickle (2 messages)
Jianhao Cao (1 message)
John Rubinstein (1 message)
Joshua Lobo (6 messages)
Leonid Sazanov (3 messages)
Li, Zongli (2 messages)
Liz Montabana (1 message)
Ludovic Renault (6 messages)
Ludtke, Steven J (1 message)
Maciej Jagielnicki (2 messages)
Martyn Winn (3 messages)
Morris, Kyle (1 message)
Oliver Clarke (1 message)
Paolo Swuec (1 message)
Robert Byrne (2 messages)
Simonas Masiulis (1 message)
Sjors Scheres (18 messages)
Smith Liu (2 messages)
Tofayel Ahmed (1 message)
Wolfgang Lugmayr (1 message)
Xiaodi Yu (3 messages)

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Subject

From Sorted by Sender, Chronologically

Date

Size

New Sender

Alexander Shkumatov

Re: post-processing in relion 1.4: memory allocation and seg fault

Alexander Shkumatov

Thu, 12 Nov 2015 15:15:06 +0100

422 lines

New Sender

Aufderheide, Antje

grouping large data sets

Aufderheide, Antje

Fri, 20 Nov 2015 15:08:37 +0000

91 lines

Re: grouping large data sets

Aufderheide, Antje

Mon, 23 Nov 2015 09:38:52 +0000

217 lines

New Sender

Basil Greber

Signal subtraction in Relion

Basil Greber

Fri, 13 Nov 2015 10:28:52 -0800

3705 lines

Re: Signal subtraction in Relion

Basil Greber

Sun, 15 Nov 2015 10:46:46 -0800

266 lines

New Sender

Benoît Zuber

Re: grouping large data sets

Benoît Zuber

Mon, 23 Nov 2015 10:01:09 +0000

189 lines

Re: isolate protein density from cryo EM map

Benoît Zuber

Thu, 12 Nov 2015 07:20:55 +0000

40 lines

New Sender

Breylon Riley

Image number ## exceeds stack size ##

Breylon Riley

Tue, 10 Nov 2015 21:15:55 -0500

60 lines

Particle extraction step: src/image.cpp line: 80 error

Breylon Riley

Tue, 10 Nov 2015 02:16:39 -0500

147 lines

New Sender

Cathy Lawson

EMDataBank Map Challenge News

Cathy Lawson

Mon, 9 Nov 2015 09:56:59 -0500

100 lines

supercomputer time available for the map challenge

Cathy Lawson

Tue, 17 Nov 2015 11:13:35 -0500

152 lines

New Sender

Chuang Liu

relion_reconstrcut with orientation parameter got from other software

Chuang Liu

Thu, 19 Nov 2015 21:20:37 +0000

43 lines

New Sender

Franken, L.E.

Re: Figure preparation: 2D projections + 2D classes + particles

Franken, L.E.

Thu, 26 Nov 2015 07:52:08 +0100

202 lines

New Sender

Grigory Sharov

Fwd: [ccpem] Particle extraction step: src/image.cpp line: 80 error

Grigory Sharov

Tue, 10 Nov 2015 12:18:28 +0100

245 lines

New Sender

hugomh

Relion normalization

hugomh

Mon, 2 Nov 2015 14:39:02 +0100

39 lines

New Sender

Huy Bui

Postprocessing with mtf correction

Huy Bui

Sun, 8 Nov 2015 18:50:21 -0500

45 lines

Re: relion_reconstrcut with orientation parameter got from other software

Huy Bui

Fri, 20 Nov 2015 13:48:58 -0500

120 lines

New Sender

Ian Tickle

Disk space requirements

Ian Tickle

Wed, 11 Nov 2015 16:40:36 +0000

21 lines

Disk space requirements.

Ian Tickle

Wed, 11 Nov 2015 16:57:05 +0000

45 lines

New Sender

Jianhao Cao

about bg_radius value

Jianhao Cao

Tue, 3 Nov 2015 17:29:30 +0000

23 lines

New Sender

John Rubinstein

alignparts_lmbfgs bug fix

John Rubinstein

Thu, 19 Nov 2015 15:34:51 -0500

33 lines

New Sender

Joshua Lobo

Post Autopick cleaning procedure in Relion 1.3

Joshua Lobo

Tue, 3 Nov 2015 19:23:31 +0000

39 lines

RELION 3D classification and 3D autorefine

Joshua Lobo

Fri, 20 Nov 2015 14:41:15 +0000

25 lines

Re: RELION 3D classification and 3D autorefine

Joshua Lobo

Mon, 23 Nov 2015 09:03:04 -0500

261 lines

Relion Stack created with autopicked particles

Joshua Lobo

Tue, 10 Nov 2015 14:14:37 +0000

25 lines

Re: Relion Stack created with autopicked particles

Joshua Lobo

Tue, 10 Nov 2015 16:30:25 -0500

129 lines

Relion symetry option for auto-refine step

Joshua Lobo

Wed, 11 Nov 2015 20:51:16 +0000

19 lines

New Sender

Leonid Sazanov

Faculty position in structural biology

Leonid Sazanov

Tue, 3 Nov 2015 18:43:06 +0000

25 lines

motioncorr and particle polishing

Leonid Sazanov

Mon, 2 Nov 2015 19:01:59 +0000

40 lines

Re: motioncorr and particle polishing

Leonid Sazanov

Tue, 3 Nov 2015 18:24:42 +0000

33 lines

New Sender

Li, Zongli

3D classification in Relion 1.4 got stuck right before Maximization

Li, Zongli

Fri, 6 Nov 2015 16:41:52 -0500

967 lines

Re: 3D classification in Relion 1.4 got stuck right before Maximization

Li, Zongli

Wed, 11 Nov 2015 09:56:14 -0500

186 lines

New Sender

Liz Montabana

Re: Relion Stack created with autopicked particles

Liz Montabana

Tue, 10 Nov 2015 14:21:32 -0800

154 lines

New Sender

Ludovic Renault

Re: Figure preparation: 2D projections + 2D classes + particles

Ludovic Renault

Wed, 25 Nov 2015 10:17:21 +0000

169 lines

Re: grouping large data sets

Ludovic Renault

Fri, 20 Nov 2015 15:16:55 +0000

116 lines

Re: Image number ## exceeds stack size ##

Ludovic Renault

Wed, 11 Nov 2015 08:52:23 +0000

85 lines

Re: RELION 3D classification and 3D autorefine

Ludovic Renault

Fri, 20 Nov 2015 14:54:25 +0000

75 lines

Re: Relion Stack created with autopicked particles

Ludovic Renault

Tue, 10 Nov 2015 14:30:54 +0000

75 lines

Re: Relion Stack created with autopicked particles

Ludovic Renault

Tue, 10 Nov 2015 22:12:20 +0000

163 lines

New Sender

Ludtke, Steven J

Re: Relion Stack created with autopicked particles

Ludtke, Steven J

Tue, 10 Nov 2015 22:57:31 +0000

325 lines

New Sender

Maciej Jagielnicki

Figure preparation: 2D projections + 2D classes + particles

Maciej Jagielnicki

Fri, 20 Nov 2015 16:11:51 +0000

29 lines

Re: Figure preparation: 2D projections + 2D classes + particles

Maciej Jagielnicki

Tue, 24 Nov 2015 15:30:11 +0000

67 lines

New Sender

Martyn Winn

Cryo-EM core facility manager position at Van Andel Research Institute

Martyn Winn

Fri, 27 Nov 2015 20:30:51 +0000

1266 lines

Re: RELION 3D classification and 3D autorefine

Martyn Winn

Fri, 20 Nov 2015 15:15:29 +0000

146 lines

Re: RELION 3D classification and 3D autorefine

Martyn Winn

Sun, 22 Nov 2015 22:35:25 +0000

55 lines

New Sender

Morris, Kyle

Re: grouping large data sets

Morris, Kyle

Mon, 23 Nov 2015 10:06:00 +0000

265 lines

New Sender

Oliver Clarke

Re: Relion Stack created with autopicked particles

Oliver Clarke

Tue, 10 Nov 2015 09:35:41 -0500

97 lines

New Sender

Paolo Swuec

Re: Figure preparation: 2D projections + 2D classes + particles

Paolo Swuec

Fri, 20 Nov 2015 17:28:26 +0000

61 lines

New Sender

Robert Byrne

MPI-related problem with Relion 1.4 and SGI MPI

Robert Byrne

Mon, 9 Nov 2015 13:34:47 +0100

49 lines

Re: MPI-related problem with Relion 1.4 and SGI MPI

Robert Byrne

Tue, 17 Nov 2015 14:18:22 +0100

80 lines

New Sender

Simonas Masiulis

Movie refinement issue

Simonas Masiulis

Wed, 25 Nov 2015 18:57:16 +0000

32 lines

New Sender

Sjors Scheres

Re: 3D classification in Relion 1.4 got stuck right before Maximization

Sjors Scheres

Sat, 7 Nov 2015 08:48:06 -0000

62 lines

Re: 3D classification in Relion 1.4 got stuck right before Maximization

Sjors Scheres

Wed, 11 Nov 2015 08:26:30 -0000

159 lines

Re: Disk space requirements.

Sjors Scheres

Wed, 11 Nov 2015 20:39:27 -0000

53 lines

Re: Figure preparation: 2D projections + 2D classes + particles

Sjors Scheres

Fri, 20 Nov 2015 17:35:27 +0000

42 lines

Re: motioncorr and particle polishing

Sjors Scheres

Tue, 3 Nov 2015 08:34:18 -0000

66 lines

Re: Movie refinement issue

Sjors Scheres

Wed, 25 Nov 2015 21:29:38 -0000

73 lines

Re: Movie refinement issue

Sjors Scheres

Thu, 26 Nov 2015 11:20:29 -0000

70 lines

Re: MPI-related problem with Relion 1.4 and SGI MPI

Sjors Scheres

Mon, 9 Nov 2015 16:30:26 +0000

49 lines

Re: one question on relion

Sjors Scheres

Fri, 20 Nov 2015 09:13:28 +0000

60 lines

Re: Post Autopick cleaning procedure in Relion 1.3

Sjors Scheres

Tue, 3 Nov 2015 20:21:08 -0000

61 lines

Re: post-processing in relion 1.4: memory allocation and seg fault

Sjors Scheres

Thu, 12 Nov 2015 19:41:47 -0000

158 lines

Re: RELION 3D classification and 3D autorefine

Sjors Scheres

Fri, 20 Nov 2015 17:34:31 +0000

58 lines

Re: RELION 3D classification and 3D autorefine

Sjors Scheres

Mon, 23 Nov 2015 09:00:38 -0000

99 lines

Re: Relion normalization

Sjors Scheres

Mon, 2 Nov 2015 15:32:06 -0000

58 lines

Re: relion_reconstrcut with orientation parameter got from other software

Sjors Scheres

Fri, 20 Nov 2015 09:15:06 +0000

54 lines

Re: Signal subtraction in Relion

Sjors Scheres

Sat, 14 Nov 2015 08:51:10 -0000

106 lines

Tutorial: sub-tomogram averaging in RELION

Sjors Scheres

Thu, 19 Nov 2015 13:50:16 +0000

38 lines

Re: Tutorial: sub-tomogram averaging in RELION

Sjors Scheres

Sat, 21 Nov 2015 08:47:51 -0000

100 lines

New Sender

Smith Liu

on vieweing mrc file and coresponding PDB by coot

Smith Liu

Mon, 2 Nov 2015 14:54:56 +0800

47 lines

one question on relion

Smith Liu

Fri, 20 Nov 2015 10:37:11 +0800

60 lines

New Sender

Tofayel Ahmed

isolate protein density from cryo EM map

Tofayel Ahmed

Thu, 12 Nov 2015 05:36:59 +0000

27 lines

New Sender

Wolfgang Lugmayr

Re: crashes with MPI_Send errors in RELION-1.4

Wolfgang Lugmayr

Mon, 2 Nov 2015 16:47:52 +0100

50 lines

New Sender

Xiaodi Yu

Re: about bg_radius value

Xiaodi Yu

Tue, 3 Nov 2015 09:45:11 -0800

39 lines

Re: isolate protein density from cryo EM map

Xiaodi Yu

Wed, 11 Nov 2015 23:01:18 -0800

45 lines

Re: Particle extraction step: src/image.cpp line: 80 error

Xiaodi Yu

Tue, 10 Nov 2015 01:37:52 -0800

65 lines

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