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October 2015


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Table of Contents:

"Relion" binary missing? (2 messages)
A spike in FSC curve (4 messages)
add extra column to star file (4 messages)
Announcing the 2015/2016 EMDataBank Model Challenge (1 message)
binning particles (5 messages)
British Biophysical Society biennial conference 6-8 July 2016 (1 message)
Coming back from coarser pixel size (2 messages)
crashes with errors in autopick_mpi in RELION-1.4 (2 messages)
crashes with MPI_Send errors in RELION-1.4 (1 message)
Does a bias in X(Y)-direction of picked particles cause problems in RELION? (4 messages)
How to increase different orientations of protein complex on the cryo-EM grid (1 message)
invert map for correct handedness (5 messages)
Junior group leader position at institut Pasteur (1 message)
Managing Relion job restarts on AWS. (3 messages)
Merging two datasets in RELION 1.3 (4 messages)
MTF K2-summit at 200kV. (1 message)
New platform manager position in Advanced Bioimaging at Warwick, UK (1 message)
New web-based deposition system for EMPIAR (1 message)
on refmac refine of the EM data (3 messages)
on resmap (2 messages)
on the map resolution (2 messages)
Particle Extraction from .box files (6 messages)
post-doc position at the MRC Laboratory of Molecular Biology (1 message)
Postdoctoral Position at ICR, London, UK (1 message)
question about run ctffind in relion (3 messages)
Regarding the 3D auto-refinement in Relion (1 message)
Relion 1.4 Origin in the mrc header is messed up (2 messages)
RELION 3D Classification query (2 messages)
Relion postprocessing FSC meanings (2 messages)
Relion: local alignments (4 messages)
RELION: Missing files in Relion tutorial. (4 messages)
Relion: MPI and threads (2 messages)
Relion: particle grouping (2 messages)
RELION: Question about auto-picked micrograph. (5 messages)
Scientific programmer EMPIAR 3D browser (2 messages)
Segmentation fault in Relion 1.4 during 3D classification (1 message)
Shared Library error (3 messages)
sharpening map according to local resolution (6 messages)
slow last iteration in autorefine (2 messages)
Specifying the position of a C2 symmetry axis (3 messages)
subtomogram averging (3 messages)
The Seventh Brazil School for Single Particle Cryo-EM (11-23 August 2016) (1 message)
The software for picking up filament automatically (1 message)
[3dem] [ccpem] on FSC curve (A can of worms...) (3 messages)

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Subject Sorted by Subject, Chronologically

From

Date

Size

New Thread

"Relion" binary missing?

"Relion" binary missing?

Breylon Riley <[log in to unmask]>

Thu, 22 Oct 2015 15:53:36 -0400

57 lines

Re: "Relion" binary missing?

Sjors Scheres <[log in to unmask]>

Fri, 23 Oct 2015 14:15:42 +0100

41 lines

New Thread

A spike in FSC curve

A spike in FSC curve

Miao Gui <[log in to unmask]>

Thu, 8 Oct 2015 13:57:11 +0100

138283 lines

Re: A spike in FSC curve

Ludovic Renault <[log in to unmask]>

Thu, 8 Oct 2015 14:28:39 +0100

128 lines

Re: A spike in FSC curve

Amédée des Georges <[log in to unmask]>

Thu, 8 Oct 2015 09:28:44 -0400

75 lines

Re: A spike in FSC curve

Sjors Scheres <[log in to unmask]>

Thu, 8 Oct 2015 17:21:43 +0100

77 lines

New Thread

add extra column to star file

add extra column to star file

Aufderheide, Antje <[log in to unmask]>

Thu, 29 Oct 2015 13:47:28 +0000

165 lines

Re: add extra column to star file

Wolfgang Lugmayr <[log in to unmask]>

Thu, 29 Oct 2015 15:58:31 +0100

341 lines

Re: add extra column to star file

Jose Miguel de la Rosa Trevin <[log in to unmask]>

Thu, 29 Oct 2015 16:13:12 +0100

353 lines

Re: add extra column to star file

Sjors Scheres <[log in to unmask]>

Fri, 30 Oct 2015 01:28:43 -0000

94 lines

New Thread

Announcing the 2015/2016 EMDataBank Model Challenge

Announcing the 2015/2016 EMDataBank Model Challenge

Cathy Lawson <[log in to unmask]>

Wed, 14 Oct 2015 12:14:24 -0400

147 lines

New Thread

binning particles

binning particles

Jianhao Cao <[log in to unmask]>

Tue, 27 Oct 2015 13:50:27 +0000

21 lines

Re: binning particles

Sjors Scheres <[log in to unmask]>

Thu, 29 Oct 2015 08:45:01 -0000

40 lines

Re: binning particles

Jianhao Cao <[log in to unmask]>

Thu, 29 Oct 2015 11:41:34 +0000

27 lines

Re: binning particles

Sjors Scheres <[log in to unmask]>

Thu, 29 Oct 2015 12:44:15 -0000

47 lines

Re: binning particles

C.J. <[log in to unmask]>

Thu, 29 Oct 2015 21:14:30 +0800

127 lines

New Thread

British Biophysical Society biennial conference 6-8 July 2016

British Biophysical Society biennial conference 6-8 July 2016

Martyn Winn <[log in to unmask]>

Wed, 28 Oct 2015 22:39:04 +0000

137 lines

New Thread

Coming back from coarser pixel size

Coming back from coarser pixel size

Haselbach, David <[log in to unmask]>

Wed, 28 Oct 2015 15:00:55 +0000

79 lines

Re: Coming back from coarser pixel size

Sjors Scheres <[log in to unmask]>

Wed, 28 Oct 2015 18:16:13 -0000

54 lines

New Thread

crashes with errors in autopick_mpi in RELION-1.4

crashes with errors in autopick_mpi in RELION-1.4

Eaazhisai KANDIAH <[log in to unmask]>

Thu, 29 Oct 2015 11:20:46 +0100

119 lines

Re: crashes with errors in autopick_mpi in RELION-1.4

Sjors Scheres <[log in to unmask]>

Thu, 29 Oct 2015 12:46:10 -0000

137 lines

New Thread

crashes with MPI_Send errors in RELION-1.4

crashes with MPI_Send errors in RELION-1.4

Sjors Scheres <[log in to unmask]>

Mon, 19 Oct 2015 16:34:06 +0100

46 lines

New Thread

Does a bias in X(Y)-direction of picked particles cause problems in RELION?

Does a bias in X(Y)-direction of picked particles cause problems in RELION?

Aufderheide, Antje <[log in to unmask]>

Mon, 19 Oct 2015 16:17:54 +0000

37 lines

Re: Does a bias in X(Y)-direction of picked particles cause problems in RELION?

Sjors Scheres <[log in to unmask]>

Mon, 19 Oct 2015 18:17:03 +0100

58 lines

Re: Does a bias in X(Y)-direction of picked particles cause problems in RELION?

Craig Yoshioka <[log in to unmask]>

Mon, 19 Oct 2015 18:28:03 +0000

146 lines

Re: Does a bias in X(Y)-direction of picked particles cause problems in RELION?

Sjors Scheres <[log in to unmask]>

Mon, 19 Oct 2015 19:46:24 +0100

104 lines

New Thread

How to increase different orientations of protein complex on the cryo-EM grid

How to increase different orientations of protein complex on the cryo-EM grid

Ms Chiung-Wen Chang <[log in to unmask]>

Mon, 12 Oct 2015 17:41:54 +0000

151 lines

New Thread

invert map for correct handedness

invert map for correct handedness

Cristina Paulino <[log in to unmask]>

Tue, 13 Oct 2015 13:30:06 +0200

20 lines

Re: invert map for correct handedness

Qiyang JIANG <[log in to unmask]>

Tue, 13 Oct 2015 13:50:11 +0200

36 lines

Re: invert map for correct handedness

Neil Ranson <[log in to unmask]>

Tue, 13 Oct 2015 12:12:34 +0000

26 lines

Re: invert map for correct handedness

Cristina Paulino <[log in to unmask]>

Tue, 13 Oct 2015 14:16:58 +0200

63 lines

Re: invert map for correct handedness

Sjors Scheres <[log in to unmask]>

Tue, 13 Oct 2015 19:55:37 +0100

78 lines

New Thread

Junior group leader position at institut Pasteur

Junior group leader position at institut Pasteur

Rémi Fronzes <[log in to unmask]>

Fri, 16 Oct 2015 19:00:17 +0200

143 lines

New Thread

Managing Relion job restarts on AWS.

Managing Relion job restarts on AWS.

Ian Tickle <[log in to unmask]>

Thu, 22 Oct 2015 15:03:47 +0100

52 lines

Re: Managing Relion job restarts on AWS.

Xiaodan Ni <[log in to unmask]>

Thu, 22 Oct 2015 11:34:36 -0400

88 lines

Re: Managing Relion job restarts on AWS.

Cianfrocco, Michael <[log in to unmask]>

Thu, 22 Oct 2015 21:01:10 +0000

131 lines

New Thread

Merging two datasets in RELION 1.3

Merging two datasets in RELION 1.3

Joshua Lobo <[log in to unmask]>

Thu, 29 Oct 2015 14:26:57 +0000

22 lines

Re: Merging two datasets in RELION 1.3

Sergey Nazarov <[log in to unmask]>

Thu, 29 Oct 2015 15:38:49 +0100

39 lines

Re: Merging two datasets in RELION 1.3

Sjors Scheres <[log in to unmask]>

Fri, 30 Oct 2015 01:30:50 -0000

40 lines

Re: Merging two datasets in RELION 1.3

Joshua Lobo <[log in to unmask]>

Thu, 29 Oct 2015 22:17:55 -0400

114 lines

New Thread

MTF K2-summit at 200kV.

MTF K2-summit at 200kV.

Zhuolun LI <[log in to unmask]>

Mon, 26 Oct 2015 15:02:25 +0100

37 lines

New Thread

New platform manager position in Advanced Bioimaging at Warwick, UK

New platform manager position in Advanced Bioimaging at Warwick, UK

Smith, Corinne <[log in to unmask]>

Tue, 6 Oct 2015 11:41:57 +0000

4230 lines

New Thread

New web-based deposition system for EMPIAR

New web-based deposition system for EMPIAR

Ardan Patwardhan <[log in to unmask]>

Fri, 16 Oct 2015 11:12:18 +0100

74 lines

New Thread

on refmac refine of the EM data

on refmac refine of the EM data

Smith Liu <[log in to unmask]>

Sat, 3 Oct 2015 01:16:56 +0800

39 lines

Re: on refmac refine of the EM data

Alan Brown <[log in to unmask]>

Fri, 2 Oct 2015 18:39:01 +0100

86 lines

Re: on refmac refine of the EM data

Smith Liu <[log in to unmask]>

Sat, 3 Oct 2015 02:33:21 +0800

102 lines

New Thread

on resmap

on resmap

Smith Liu <[log in to unmask]>

Tue, 13 Oct 2015 10:09:45 +0800

41 lines

Re: on resmap

Ludtke, Steven J <[log in to unmask]>

Tue, 13 Oct 2015 03:19:51 +0000

207 lines

New Thread

on the map resolution

on the map resolution

Smith Liu <[log in to unmask]>

Thu, 8 Oct 2015 21:41:36 +0800

30 lines

Re: on the map resolution

Benoît Zuber <[log in to unmask]>

Thu, 8 Oct 2015 14:19:14 +0000

184 lines

New Thread

Particle Extraction from .box files

Particle Extraction from .box files

Joshua Lobo <[log in to unmask]>

Sat, 3 Oct 2015 17:26:26 +0100

32 lines

Re: Particle Extraction from .box files

Sjors Scheres <[log in to unmask]>

Sun, 4 Oct 2015 20:55:03 +0100

53 lines

Re: Particle Extraction from .box files

Joshua Lobo <[log in to unmask]>

Mon, 5 Oct 2015 09:51:36 -0400

231 lines

Re: Particle Extraction from .box files

Joshua Lobo <[log in to unmask]>

Mon, 5 Oct 2015 11:27:54 -0400

210 lines

Re: Particle Extraction from .box files

Ludovic Renault <[log in to unmask]>

Mon, 5 Oct 2015 16:27:57 +0100

193 lines

Re: Particle Extraction from .box files

Sjors Scheres <[log in to unmask]>

Mon, 5 Oct 2015 22:44:21 +0100

125 lines

New Thread

post-doc position at the MRC Laboratory of Molecular Biology

post-doc position at the MRC Laboratory of Molecular Biology

Paula da Fonseca <[log in to unmask]>

Mon, 12 Oct 2015 19:37:18 +0100

99 lines

New Thread

Postdoctoral Position at ICR, London, UK

Postdoctoral Position at ICR, London, UK

Sebastian Guettler <[log in to unmask]>

Thu, 15 Oct 2015 19:50:07 +0100

151 lines

New Thread

question about run ctffind in relion

question about run ctffind in relion

Hui Wang <[log in to unmask]>

Fri, 23 Oct 2015 15:16:46 -0400

657 lines

Re: question about run ctffind in relion

Alexis Rohou <[log in to unmask]>

Fri, 23 Oct 2015 15:39:19 -0400

327 lines

Re: question about run ctffind in relion

Wolfgang Lugmayr <[log in to unmask]>

Tue, 27 Oct 2015 10:51:35 +0100

774 lines

New Thread

Regarding the 3D auto-refinement in Relion

Regarding the 3D auto-refinement in Relion

Sameer K Singh <[log in to unmask]>

Thu, 15 Oct 2015 17:23:16 +0000

577 lines

New Thread

Relion 1.4 Origin in the mrc header is messed up

Relion 1.4 Origin in the mrc header is messed up

Bettina Boettcher <[log in to unmask]>

Mon, 5 Oct 2015 17:15:48 +0100

63 lines

Re: Relion 1.4 Origin in the mrc header is messed up

Sjors Scheres <[log in to unmask]>

Mon, 5 Oct 2015 22:46:02 +0100

84 lines

New Thread

RELION 3D Classification query

Re: RELION 3D Classification query

Sjors Scheres <[log in to unmask]>

Tue, 20 Oct 2015 16:32:10 +0100

62 lines

Re: RELION 3D Classification query

Sjors Scheres <[log in to unmask]>

Tue, 20 Oct 2015 16:54:37 +0100

96 lines

New Thread

Relion postprocessing FSC meanings

Re: Relion postprocessing FSC meanings

Craig Yoshioka <[log in to unmask]>

Thu, 29 Oct 2015 17:41:47 +0000

17 lines

Re: Relion postprocessing FSC meanings

Sjors Scheres <[log in to unmask]>

Fri, 30 Oct 2015 01:32:15 -0000

35 lines

New Thread

Relion: local alignments

Relion: local alignments

Craig Yoshioka <[log in to unmask]>

Thu, 8 Oct 2015 17:25:45 +0000

82 lines

Re: Relion: local alignments

Huy Bui <[log in to unmask]>

Thu, 8 Oct 2015 15:31:19 -0400

61 lines

Re: Relion: local alignments

Sjors Scheres <[log in to unmask]>

Thu, 8 Oct 2015 20:51:22 +0100

68 lines

Re: Relion: local alignments

Craig Yoshioka <[log in to unmask]>

Thu, 8 Oct 2015 19:59:55 +0000

148 lines

New Thread

RELION: Missing files in Relion tutorial.

RELION: Missing files in Relion tutorial.

Ian Tickle <[log in to unmask]>

Fri, 2 Oct 2015 17:06:38 +0100

63 lines

Re: RELION: Missing files in Relion tutorial.

Sjors Scheres <[log in to unmask]>

Fri, 2 Oct 2015 20:54:33 +0100

58 lines

Re: RELION: Missing files in Relion tutorial.

Ian Tickle <[log in to unmask]>

Sun, 4 Oct 2015 11:47:17 +0100

166 lines

Re: RELION: Missing files in Relion tutorial.

Sjors Scheres <[log in to unmask]>

Sun, 4 Oct 2015 20:58:21 +0100

104 lines

New Thread

Relion: MPI and threads

Relion: MPI and threads

Craig Yoshioka <[log in to unmask]>

Thu, 8 Oct 2015 16:54:39 +0000

64 lines

Re: Relion: MPI and threads

Sjors Scheres <[log in to unmask]>

Thu, 8 Oct 2015 20:47:30 +0100

48 lines

New Thread

Relion: particle grouping

Relion: particle grouping

Craig Yoshioka <[log in to unmask]>

Thu, 1 Oct 2015 17:44:05 +0100

60 lines

Re: Relion: particle grouping

Sjors Scheres <[log in to unmask]>

Fri, 2 Oct 2015 08:29:41 +0100

84 lines

New Thread

RELION: Question about auto-picked micrograph.

RELION: Question about auto-picked micrograph.

Ian Tickle <[log in to unmask]>

Tue, 6 Oct 2015 18:18:55 +0100

71 lines

Re: RELION: Question about auto-picked micrograph.

Fislage, Marcus <[log in to unmask]>

Tue, 6 Oct 2015 19:13:45 +0000

231 lines

Re: RELION: Question about auto-picked micrograph.

Ian Tickle <[log in to unmask]>

Tue, 6 Oct 2015 21:20:29 +0100

246 lines

Re: RELION: Question about auto-picked micrograph.

Raimond NL <[log in to unmask]>

Wed, 7 Oct 2015 05:36:17 +0200

106 lines

Re: RELION: Question about auto-picked micrograph.

Ian Tickle <[log in to unmask]>

Thu, 8 Oct 2015 18:32:13 +0100

312 lines

New Thread

Scientific programmer EMPIAR 3D browser

Scientific programmer EMPIAR 3D browser

Ardan Patwardhan <[log in to unmask]>

Mon, 12 Oct 2015 09:04:07 +0100

48 lines

Scientific programmer EMPIAR 3D browser

Ardan Patwardhan <[log in to unmask]>

Thu, 29 Oct 2015 16:51:50 +0000

75 lines

New Thread

Segmentation fault in Relion 1.4 during 3D classification

Segmentation fault in Relion 1.4 during 3D classification

Eugene Valkov <[log in to unmask]>

Fri, 9 Oct 2015 09:44:20 +0200

112 lines

New Thread

Shared Library error

Shared Library error

Breylon Riley <[log in to unmask]>

Fri, 16 Oct 2015 18:54:06 -0400

108 lines

Re: Shared Library error

Sjors Scheres <[log in to unmask]>

Sat, 17 Oct 2015 08:44:22 +0100

69 lines

Re: Shared Library error

Wolfgang Lugmayr <[log in to unmask]>

Mon, 19 Oct 2015 12:02:14 +0200

218 lines

New Thread

sharpening map according to local resolution

sharpening map according to local resolution

Yan Zhang <[log in to unmask]>

Tue, 13 Oct 2015 13:53:59 -0400

32 lines

Re: sharpening map according to local resolution

Sjors Scheres <[log in to unmask]>

Tue, 13 Oct 2015 19:59:14 +0100

40 lines

Re: sharpening map according to local resolution

Alan Brown <[log in to unmask]>

Tue, 13 Oct 2015 21:22:03 +0100

36 lines

Re: sharpening map according to local resolution

Benoît Zuber <[log in to unmask]>

Wed, 14 Oct 2015 07:19:19 +0000

63 lines

Re: sharpening map according to local resolution

Sjors Scheres <[log in to unmask]>

Wed, 14 Oct 2015 09:02:09 +0100

81 lines

Re: sharpening map according to local resolution

Benoît Zuber <[log in to unmask]>

Wed, 14 Oct 2015 08:05:21 +0000

89 lines

New Thread

slow last iteration in autorefine

Re: slow last iteration in autorefine

Leonid Sazanov <[log in to unmask]>

Tue, 6 Oct 2015 18:17:43 +0100

33 lines

Re: slow last iteration in autorefine

Sjors Scheres <[log in to unmask]>

Wed, 7 Oct 2015 08:35:41 +0100

52 lines

New Thread

Specifying the position of a C2 symmetry axis

Specifying the position of a C2 symmetry axis

Maciej Jagielnicki <[log in to unmask]>

Fri, 23 Oct 2015 18:41:29 +0100

37 lines

Re: Specifying the position of a C2 symmetry axis

Sjors Scheres <[log in to unmask]>

Sat, 24 Oct 2015 08:02:10 +0100

55 lines

Re: Specifying the position of a C2 symmetry axis

Maciej Jagielnicki <[log in to unmask]>

Tue, 27 Oct 2015 15:50:04 +0000

24 lines

New Thread

subtomogram averging

subtomogram averging

Bettina Keszthelyi <[log in to unmask]>

Mon, 19 Oct 2015 17:46:06 -0700

66 lines

Re: subtomogram averging

Tanmay Bharat <[log in to unmask]>

Tue, 20 Oct 2015 12:26:46 +0100

58 lines

Re: subtomogram averging

Sjors Scheres <[log in to unmask]>

Tue, 20 Oct 2015 17:17:38 +0100

70 lines

New Thread

The Seventh Brazil School for Single Particle Cryo-EM (11-23 August 2016)

The Seventh Brazil School for Single Particle Cryo-EM (11-23 August 2016)

Marin van Heel <[log in to unmask]>

Fri, 9 Oct 2015 15:29:13 +0200

1201 lines

New Thread

The software for picking up filament automatically

The software for picking up filament automatically

zhongjun hu <[log in to unmask]>

Fri, 2 Oct 2015 19:00:43 -0400

104 lines

New Thread

[3dem] [ccpem] on FSC curve (A can of worms...)

Re: [3dem] [ccpem] on FSC curve (A can of worms...)

Marin van Heel <[log in to unmask]>

Fri, 21 Aug 2015 19:54:38 -0300

918 lines

Re: [3dem] [ccpem] on FSC curve (A can of worms...)

Marin van Heel <[log in to unmask]>

Sun, 30 Aug 2015 12:58:23 -0300

2838 lines

Re: [3dem] [ccpem] on FSC curve (A can of worms...)

Marin van Heel <[log in to unmask]>

Sun, 30 Aug 2015 17:50:31 -0300

1930 lines

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