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May 2015


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Table of Contents:

2 postdoc positions @ MRC-LMB (1 message)
Advice on movie processing - use of cluster resources (5 messages)
CCP-EM Spring Symposium - Live Stream (1 message)
cluster jobs quitting prematurely (4 messages)
Combine shiny particles from two datasets (3 messages)
Computational Needs Survey (1 message)
creating 2d projections from 3d model (8 messages)
cross-correlation between 2D classes and 3D retroprojection and relion (2 messages)
Density difference maps using Relion (3 messages)
file doesn't exist error on continue after SEGMENTATION fault (3 messages)
fsc with mask after using mask for refinement (6 messages)
Fwd: Question on particles in RELION (2 messages)
How to continue run at auto-refine mode in Relion (1 message)
integrate several subframs into one subframe in movie stack (9 messages)
masking (1 message)
memory issue with refinement of movie particles? (6 messages)
memory issue with refinement of movie particles? from C Akey (3 messages)
Movie Particles extraction (and particle polishing) with Dark-subtracted only movies (2 messages)
on increasing EM map resolution by modifying the b-factor level (3 messages)
Open IT scientific computing support position at EMBL (1 message)
polish error (1 message)
Problem at the end of auto-refine (2 messages)
Question on particles in RELION (1 message)
Refmac SFCALC output missing ERROR (1 message)
RELION 1.3 with external 2D averages for autopicking (2 messages)
relion crashing but particles seem ok (3 messages)
Relion running slow - threading issues (1 message)
Relion skipping maximization in movie refinement (3 messages)
Segmentation faults (1 message)
using refmac for structure refinement obtained by cryo-EM (1 message)

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Subject Sorted by Subject, Chronologically

From

Date

Size

New Thread

2 postdoc positions @ MRC-LMB

2 postdoc positions @ MRC-LMB

Sjors Scheres <[log in to unmask]>

Fri, 8 May 2015 11:28:58 +0100

61 lines

New Thread

Advice on movie processing - use of cluster resources

Advice on movie processing - use of cluster resources

Ashley Pike <[log in to unmask]>

Thu, 14 May 2015 14:10:02 +0000

220 lines

Re: Advice on movie processing - use of cluster resources

Sjors Scheres <[log in to unmask]>

Thu, 14 May 2015 19:19:36 +0100

109 lines

Re: Advice on movie processing - use of cluster resources

Ashley Pike <[log in to unmask]>

Thu, 14 May 2015 20:09:08 +0000

213 lines

Re: Advice on movie processing - use of cluster resources

Sjors Scheres <[log in to unmask]>

Fri, 15 May 2015 08:31:03 +0100

235 lines

Re: Advice on movie processing - use of cluster resources

Ashley Pike <[log in to unmask]>

Fri, 15 May 2015 11:20:56 +0000

254 lines

New Thread

CCP-EM Spring Symposium - Live Stream

CCP-EM Spring Symposium - Live Stream

Tom Burnley <[log in to unmask]>

Wed, 27 May 2015 09:14:31 +0100

72 lines

New Thread

cluster jobs quitting prematurely

cluster jobs quitting prematurely

Christopher Akey <[log in to unmask]>

Thu, 21 May 2015 01:41:21 +0100

78 lines

Re: cluster jobs quitting prematurely

Qiu-Xing Jiang <[log in to unmask]>

Thu, 21 May 2015 02:49:58 +0000

123 lines

Re: cluster jobs quitting prematurely

Sjors Scheres <[log in to unmask]>

Fri, 22 May 2015 10:13:07 +0100

141 lines

Re: cluster jobs quitting prematurely

Qiu-Xing Jiang <[log in to unmask]>

Fri, 22 May 2015 10:45:55 +0000

387 lines

New Thread

Combine shiny particles from two datasets

Combine shiny particles from two datasets

Kailu Yang <[log in to unmask]>

Tue, 5 May 2015 00:22:52 -0500

50 lines

Re: Combine shiny particles from two datasets

Ludovic Renault <[log in to unmask]>

Tue, 5 May 2015 09:09:45 +0100

85 lines

Re: Combine shiny particles from two datasets

Kailu Yang <[log in to unmask]>

Wed, 6 May 2015 00:08:22 -0500

116 lines

New Thread

Computational Needs Survey

Computational Needs Survey

Tom Burnley <[log in to unmask]>

Tue, 26 May 2015 16:03:34 +0100

77 lines

New Thread

creating 2d projections from 3d model

creating 2d projections from 3d model

Franken, L.E. <[log in to unmask]>

Mon, 18 May 2015 11:36:06 +0200

152 lines

Re: creating 2d projections from 3d model

Jose Miguel de la Rosa Trevin <[log in to unmask]>

Mon, 18 May 2015 11:58:38 +0200

189 lines

Re: creating 2d projections from 3d model

Sjors Scheres <[log in to unmask]>

Mon, 18 May 2015 16:10:59 +0100

104 lines

Re: creating 2d projections from 3d model

Jose Miguel de la Rosa Trevin <[log in to unmask]>

Mon, 18 May 2015 22:47:01 +0200

244 lines

Re: creating 2d projections from 3d model

Sjors Scheres <[log in to unmask]>

Tue, 19 May 2015 07:54:30 +0100

136 lines

Re: creating 2d projections from 3d model

Franken, L.E. <[log in to unmask]>

Tue, 19 May 2015 09:00:32 +0200

323 lines

Re: creating 2d projections from 3d model

Sjors Scheres <[log in to unmask]>

Tue, 19 May 2015 19:09:12 +0100

177 lines

Re: creating 2d projections from 3d model

Franken, L.E. <[log in to unmask]>

Thu, 28 May 2015 15:56:29 +0200

253 lines

New Thread

cross-correlation between 2D classes and 3D retroprojection and relion

cross-correlation between 2D classes and 3D retroprojection and relion

Fabien Bergeret <[log in to unmask]>

Mon, 25 May 2015 21:12:33 +0100

22 lines

Re: cross-correlation between 2D classes and 3D retroprojection and relion

giulia zanetti <[log in to unmask]>

Tue, 26 May 2015 08:22:45 +0100

45 lines

New Thread

Density difference maps using Relion

Density difference maps using Relion

Sameer K Singh <[log in to unmask]>

Wed, 13 May 2015 01:02:33 +0000

467 lines

Re: Density difference maps using Relion

Sjors Scheres <[log in to unmask]>

Wed, 13 May 2015 08:15:31 +0100

68 lines

Re: Density difference maps using Relion

Alexis Rohou <[log in to unmask]>

Wed, 13 May 2015 07:34:13 -0400

58 lines

New Thread

file doesn't exist error on continue after SEGMENTATION fault

file doesn't exist error on continue after SEGMENTATION fault

Christopher Akey <[log in to unmask]>

Sun, 24 May 2015 15:26:23 +0100

56 lines

file doesn't exist error on continue after SEGMENTATION fault

Christopher Akey <[log in to unmask]>

Tue, 26 May 2015 00:13:28 +0100

59 lines

Re: file doesn't exist error on continue after SEGMENTATION fault

Ludovic Renault <[log in to unmask]>

Tue, 26 May 2015 07:20:43 +0100

142 lines

New Thread

fsc with mask after using mask for refinement

fsc with mask after using mask for refinement

Christopher Akey <[log in to unmask]>

Tue, 19 May 2015 22:21:19 +0100

45 lines

Re: fsc with mask after using mask for refinement

Sjors Scheres <[log in to unmask]>

Wed, 20 May 2015 08:36:17 +0100

74 lines

Re: fsc with mask after using mask for refinement

Alan Brown <[log in to unmask]>

Wed, 20 May 2015 09:30:21 +0100

167 lines

Re: fsc with mask after using mask for refinement

Sjors Scheres <[log in to unmask]>

Wed, 20 May 2015 09:49:26 +0100

104 lines

Re: fsc with mask after using mask for refinement

Mike Strauss <[log in to unmask]>

Wed, 20 May 2015 11:11:55 -0400

137 lines

Re: fsc with mask after using mask for refinement

Sjors Scheres <[log in to unmask]>

Wed, 20 May 2015 18:52:49 +0100

150 lines

New Thread

Fwd: Question on particles in RELION

Fwd: Question on particles in RELION

Marcus Gallagher-Jones <[log in to unmask]>

Mon, 18 May 2015 22:07:45 -0700

37 lines

Re: Fwd: Question on particles in RELION

Sjors Scheres <[log in to unmask]>

Tue, 19 May 2015 07:59:35 +0100

80 lines

New Thread

How to continue run at auto-refine mode in Relion

How to continue run at auto-refine mode in Relion

zhongjun hu <[log in to unmask]>

Thu, 7 May 2015 23:57:21 -0400

104 lines

New Thread

integrate several subframs into one subframe in movie stack

integrate several subframs into one subframe in movie stack

Stone Zhang <[log in to unmask]>

Tue, 19 May 2015 16:10:23 -0400

40 lines

Re: integrate several subframs into one subframe in movie stack

Meyerson, Joel (NIH/NCI) [F] <[log in to unmask]>

Tue, 19 May 2015 20:23:27 +0000

40 lines

Re: integrate several subframs into one subframe in movie stack

Sjors Scheres <[log in to unmask]>

Wed, 20 May 2015 08:30:57 +0100

41 lines

Re: integrate several subframs into one subframe in movie stack

giulia zanetti <[log in to unmask]>

Wed, 20 May 2015 12:40:09 +0100

57 lines

Re: integrate several subframs into one subframe in movie stack

Stone Zhang <[log in to unmask]>

Wed, 20 May 2015 09:40:49 -0400

151 lines

Re: integrate several subframs into one subframe in movie stack

Marin van Heel <[log in to unmask]>

Wed, 20 May 2015 16:40:15 +0200

39 lines

Re: integrate several subframs into one subframe in movie stack

Sjors Scheres <[log in to unmask]>

Wed, 20 May 2015 18:56:39 +0100

80 lines

Re: integrate several subframs into one subframe in movie stack

Stone Zhang <[log in to unmask]>

Fri, 22 May 2015 12:45:08 -0400

228 lines

Re: integrate several subframs into one subframe in movie stack

Stone Zhang <[log in to unmask]>

Fri, 22 May 2015 12:49:44 -0400

247 lines

New Thread

masking

masking

Franken, L.E. <[log in to unmask]>

Thu, 28 May 2015 07:26:22 +0200

111 lines

New Thread

memory issue with refinement of movie particles?

memory issue with refinement of movie particles?

SUBSCRIBE CCPEM Christopher Akey <[log in to unmask]>

Tue, 5 May 2015 13:44:48 +0100

56 lines

Re: memory issue with refinement of movie particles?

Christopher Akey <[log in to unmask]>

Tue, 5 May 2015 16:13:32 +0100

40 lines

Re: memory issue with refinement of movie particles?

Kliment Verba <[log in to unmask]>

Tue, 5 May 2015 19:14:59 +0100

27 lines

Re: memory issue with refinement of movie particles?

Sjors Scheres <[log in to unmask]>

Wed, 6 May 2015 17:35:30 +0100

58 lines

Re: memory issue with refinement of movie particles?

Benoît Zuber <[log in to unmask]>

Wed, 6 May 2015 22:05:06 +0000

81 lines

Re: memory issue with refinement of movie particles?

Sjors Scheres <[log in to unmask]>

Fri, 8 May 2015 11:31:28 +0100

73 lines

New Thread

memory issue with refinement of movie particles? from C Akey

Re: memory issue with refinement of movie particles? from C Akey

Christopher Akey <[log in to unmask]>

Fri, 8 May 2015 08:32:09 -0400

162 lines

Re: memory issue with refinement of movie particles? from C Akey

Sjors Scheres <[log in to unmask]>

Sat, 9 May 2015 08:29:07 +0100

170 lines

Re: memory issue with refinement of movie particles? from C Akey

Sjors Scheres <[log in to unmask]>

Wed, 13 May 2015 08:13:03 +0100

390 lines

New Thread

Movie Particles extraction (and particle polishing) with Dark-subtracted only movies

Movie Particles extraction (and particle polishing) with Dark-subtracted only movies

Vincent Yip <[log in to unmask]>

Wed, 6 May 2015 15:32:12 +0000

54 lines

Re: Movie Particles extraction (and particle polishing) with Dark-subtracted only movies

Sjors Scheres <[log in to unmask]>

Wed, 6 May 2015 17:32:17 +0100

52 lines

New Thread

on increasing EM map resolution by modifying the b-factor level

on increasing EM map resolution by modifying the b-factor level

Smith Liu <[log in to unmask]>

Sun, 24 May 2015 13:15:52 +0800

32 lines

Re: on increasing EM map resolution by modifying the b-factor level

Ludovic Renault <[log in to unmask]>

Sun, 24 May 2015 07:32:25 +0100

72 lines

Re: on increasing EM map resolution by modifying the b-factor level

Marin van Heel <[log in to unmask]>

Sun, 24 May 2015 10:31:31 +0200

237 lines

New Thread

Open IT scientific computing support position at EMBL

Open IT scientific computing support position at EMBL

Carsten Sachse <[log in to unmask]>

Wed, 6 May 2015 17:45:54 +0200

114 lines

New Thread

polish error

polish error

Stone Zhang <[log in to unmask]>

Tue, 26 May 2015 21:26:11 -0400

43 lines

New Thread

Problem at the end of auto-refine

Problem at the end of auto-refine

Joe Wang <[log in to unmask]>

Fri, 8 May 2015 17:38:29 +0100

35 lines

Re: Problem at the end of auto-refine

Sjors Scheres <[log in to unmask]>

Sat, 9 May 2015 08:23:27 +0100

61 lines

New Thread

Question on particles in RELION

Question on particles in RELION

Marcus Gallagher-Jones <[log in to unmask]>

Fri, 15 May 2015 16:07:44 -0700

37 lines

New Thread

Refmac SFCALC output missing ERROR

Refmac SFCALC output missing ERROR

Kaushal, Prem (HEALTH) <[log in to unmask]>

Sun, 31 May 2015 15:38:26 +0000

1359 lines

New Thread

RELION 1.3 with external 2D averages for autopicking

RELION 1.3 with external 2D averages for autopicking

Joshua Lobo <[log in to unmask]>

Fri, 22 May 2015 15:17:27 +0100

28 lines

Re: RELION 1.3 with external 2D averages for autopicking

Sjors Scheres <[log in to unmask]>

Sat, 23 May 2015 08:31:09 +0100

40 lines

New Thread

relion crashing but particles seem ok

relion crashing but particles seem ok

Hstau Y. Liao <[log in to unmask]>

Fri, 22 May 2015 00:10:04 -0400

14335 lines

Re: relion crashing but particles seem ok

Hstau Y. Liao <[log in to unmask]>

Fri, 22 May 2015 00:26:18 -0400

667 lines

Re: relion crashing but particles seem ok

Sjors Scheres <[log in to unmask]>

Fri, 22 May 2015 10:09:08 +0100

263 lines

New Thread

Relion running slow - threading issues

Relion running slow - threading issues

Amédée des Georges <[log in to unmask]>

Wed, 13 May 2015 23:26:07 -0400

69 lines

New Thread

Relion skipping maximization in movie refinement

Relion skipping maximization in movie refinement

Meyerson, Joel (NIH/NCI) [F] <[log in to unmask]>

Mon, 18 May 2015 15:00:14 +0000

36 lines

Re: Relion skipping maximization in movie refinement

Sjors Scheres <[log in to unmask]>

Mon, 18 May 2015 16:13:32 +0100

58 lines

Re: Relion skipping maximization in movie refinement

Meyerson, Joel (NIH/NCI) [F] <[log in to unmask]>

Fri, 22 May 2015 14:24:36 +0000

70 lines

New Thread

Segmentation faults

Segmentation faults

Christopher Akey <[log in to unmask]>

Sun, 24 May 2015 14:32:58 +0100

63 lines

New Thread

using refmac for structure refinement obtained by cryo-EM

Re: using refmac for structure refinement obtained by cryo-EM

Agnel P Joseph <[log in to unmask]>

Fri, 1 May 2015 09:51:06 +0000

215 lines

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