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October 2014


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Table of Contents:

'flatten-solvent' option in 3D auto-refine (2 messages)
3D classification and solvent mask (5 messages)
Convergence of 3D classification (7 messages)
Converting particle stacks in img/hed-files to mrcs/star-files for Relion (3 messages)
Converting project from Xmipp 3.1 to Relion (1 message)
Error when run 3D auto-refine (5 messages)
Euler angle distribution visualization (4 messages)
FW: Survey on visualisation (1 message)
impose sym in the last round (2 messages)
movie mode in small chunks (2 messages)
Number of frames in the running averages (2 messages)
openMP (3 messages)
Orientation distribution and associated rot/tilt angles (2 messages)
Particle polishing on pre-aligned data (4 messages)
Particle polishing segmentation fault (16 messages)
PDBe workshop on programmatic access to macromolecular structure information, 20-21 Nov 2014, Cambridge UK (1 message)
Post-doc position in Glasgow (1 message)
Postdoc position Diamond Light Source, UK (1 message)
Refinment (2 messages)
Relion FSC curves (4 messages)
Relion Star labels duplicated (2 messages)
Relion: 2D Classification crashing on 2nd iteration (7 messages)
RELION: 3D classification crash (2 messages)
Relion: Benchmarking Tools (1 message)
Relion: problem when extracting movie particles (1 message)
Relion: refinement using movie particles (3 messages)
rlnMicrographScaleCorrection is very high (3 messages)
Segmentation fault during 3D auto-refine (2 messages)
warning for installation with mvapich2 + gcc (3 messages)
warnings in compilation (2 messages)
Weird rings in Relion 2D classificaction (5 messages)

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Subject Sorted by Subject, Chronologically

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Date

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New Thread

'flatten-solvent' option in 3D auto-refine

'flatten-solvent' option in 3D auto-refine

Eaazhisai Kandiah <[log in to unmask]>

Thu, 2 Oct 2014 16:30:34 +0100

20 lines

Re: 'flatten-solvent' option in 3D auto-refine

Sjors Scheres <[log in to unmask]>

Fri, 3 Oct 2014 12:15:18 +0100

38 lines

New Thread

3D classification and solvent mask

3D classification and solvent mask

Somnath Dutta <[log in to unmask]>

Fri, 17 Oct 2014 10:09:38 -0400

72 lines

Re: 3D classification and solvent mask

Sjors Scheres <[log in to unmask]>

Fri, 17 Oct 2014 16:12:09 +0100

58 lines

Re: 3D classification and solvent mask

Somnath Dutta <[log in to unmask]>

Fri, 17 Oct 2014 12:02:08 -0400

182 lines

Re: 3D classification and solvent mask

Sjors Scheres <[log in to unmask]>

Sat, 18 Oct 2014 08:49:05 +0100

117 lines

Re: 3D classification and solvent mask

Somnath Dutta <[log in to unmask]>

Sat, 18 Oct 2014 11:45:14 -0400

291 lines

New Thread

Convergence of 3D classification

Convergence of 3D classification

Sebastian Kube <[log in to unmask]>

Wed, 22 Oct 2014 13:32:15 +0100

1223 lines

Re: Convergence of 3D classification

Sjors Scheres <[log in to unmask]>

Wed, 22 Oct 2014 19:28:49 +0100

77 lines

Re: Convergence of 3D classification

Stone Zhang <[log in to unmask]>

Thu, 23 Oct 2014 11:49:25 -0400

204 lines

Re: Convergence of 3D classification

Sjors Scheres <[log in to unmask]>

Thu, 23 Oct 2014 17:33:56 +0100

122 lines

Re: Convergence of 3D classification

Stone Zhang <[log in to unmask]>

Thu, 23 Oct 2014 14:59:50 -0400

310 lines

Re: Convergence of 3D classification

Sjors Scheres <[log in to unmask]>

Thu, 23 Oct 2014 20:30:45 +0100

179 lines

Re: Convergence of 3D classification

Stone Zhang <[log in to unmask]>

Thu, 23 Oct 2014 15:57:06 -0400

428 lines

New Thread

Converting particle stacks in img/hed-files to mrcs/star-files for Relion

Converting particle stacks in img/hed-files to mrcs/star-files for Relion

Haugwitz, Martin <[log in to unmask]>

Tue, 28 Oct 2014 17:12:28 +0000

35 lines

Re: Converting particle stacks in img/hed-files to mrcs/star-files for Relion

Steven Ludtke <[log in to unmask]>

Tue, 28 Oct 2014 12:19:25 -0500

71 lines

Re: Converting particle stacks in img/hed-files to mrcs/star-files for Relion

michael <[log in to unmask]>

Wed, 29 Oct 2014 16:23:46 +0100

57 lines

New Thread

Converting project from Xmipp 3.1 to Relion

Re: Converting project from Xmipp 3.1 to Relion

Jose Miguel de la Rosa Trevin <[log in to unmask]>

Wed, 1 Oct 2014 13:37:57 +0200

92 lines

New Thread

Error when run 3D auto-refine

Error when run 3D auto-refine

Li, Zongli <[log in to unmask]>

Mon, 20 Oct 2014 10:56:23 -0400

36 lines

Re: Error when run 3D auto-refine

Sjors Scheres <[log in to unmask]>

Mon, 20 Oct 2014 16:23:15 +0100

53 lines

Re: Error when run 3D auto-refine

Li, Zongli <[log in to unmask]>

Mon, 20 Oct 2014 11:25:23 -0400

76 lines

Re: Error when run 3D auto-refine

Sjors Scheres <[log in to unmask]>

Mon, 20 Oct 2014 16:57:26 +0100

85 lines

Re: Error when run 3D auto-refine

Li, Zongli <[log in to unmask]>

Mon, 20 Oct 2014 11:59:29 -0400

109 lines

New Thread

Euler angle distribution visualization

Euler angle distribution visualization

Gökhan Tolun <[log in to unmask]>

Mon, 20 Oct 2014 17:40:57 -0400

50 lines

Re: Euler angle distribution visualization

Jose Miguel de la Rosa Trevin <[log in to unmask]>

Tue, 21 Oct 2014 00:31:40 +0200

5635 lines

Re: Euler angle distribution visualization

Sjors Scheres <[log in to unmask]>

Tue, 21 Oct 2014 07:46:34 +0100

48 lines

Re: Euler angle distribution visualization

Gökhan Tolun <[log in to unmask]>

Tue, 21 Oct 2014 12:18:56 -0400

133 lines

New Thread

FW: Survey on visualisation

FW: Survey on visualisation

Martyn Winn <[log in to unmask]>

Thu, 9 Oct 2014 22:47:50 +0000

126 lines

New Thread

impose sym in the last round

impose sym in the last round

Manikandan KARUPPASAMY <[log in to unmask]>

Fri, 31 Oct 2014 09:44:19 +0100

18 lines

Re: impose sym in the last round

Sjors Scheres <[log in to unmask]>

Fri, 31 Oct 2014 08:57:34 -0000

38 lines

New Thread

movie mode in small chunks

movie mode in small chunks

Amedee des Georges <[log in to unmask]>

Wed, 15 Oct 2014 18:18:39 -0400

113 lines

Re: movie mode in small chunks

Sjors Scheres <[log in to unmask]>

Thu, 16 Oct 2014 06:16:05 +0100

60 lines

New Thread

Number of frames in the running averages

Number of frames in the running averages

Shenping Wu <[log in to unmask]>

Thu, 2 Oct 2014 18:14:51 +0100

22 lines

Re: Number of frames in the running averages

Sjors Scheres <[log in to unmask]>

Fri, 3 Oct 2014 09:17:10 +0100

34 lines

New Thread

openMP

Re: openMP

Qiu-Xing Jiang <[log in to unmask]>

Wed, 29 Oct 2014 13:47:48 +0000

67 lines

Re: openMP

Sjors Scheres <[log in to unmask]>

Wed, 29 Oct 2014 15:32:07 -0000

85 lines

Re: openMP

Qiu-Xing Jiang <[log in to unmask]>

Wed, 29 Oct 2014 15:51:16 +0000

100 lines

New Thread

Orientation distribution and associated rot/tilt angles

Orientation distribution and associated rot/tilt angles

Toshio Moriya <[log in to unmask]>

Wed, 15 Oct 2014 15:28:44 +0100

44 lines

Re: Orientation distribution and associated rot/tilt angles

Sjors Scheres <[log in to unmask]>

Wed, 15 Oct 2014 17:04:27 +0100

61 lines

New Thread

Particle polishing on pre-aligned data

Particle polishing on pre-aligned data

Joel Meyerson <[log in to unmask]>

Thu, 2 Oct 2014 17:31:49 -0400

18 lines

Re: Particle polishing on pre-aligned data

Sjors Scheres <[log in to unmask]>

Fri, 3 Oct 2014 12:31:03 +0100

38 lines

Re: Particle polishing on pre-aligned data

Qiu-Xing Jiang <[log in to unmask]>

Sun, 5 Oct 2014 20:16:00 +0000

45 lines

Re: Particle polishing on pre-aligned data

Sjors Scheres <[log in to unmask]>

Mon, 6 Oct 2014 08:19:25 +0100

103 lines

New Thread

Particle polishing segmentation fault

Particle polishing segmentation fault

SUBSCRIBE CCPEM SIddhanta <[log in to unmask]>

Fri, 17 Oct 2014 08:53:50 +0100

40 lines

Re: Particle polishing segmentation fault

Sjors Scheres <[log in to unmask]>

Fri, 17 Oct 2014 10:50:40 +0100

43 lines

Re: Particle polishing segmentation fault

Qiu-Xing Jiang <[log in to unmask]>

Fri, 17 Oct 2014 13:58:03 +0000

81 lines

Re: Particle polishing segmentation fault

Qiu-Xing Jiang <[log in to unmask]>

Fri, 17 Oct 2014 14:15:29 +0000

66 lines

Re: Particle polishing segmentation fault

SUBSCRIBE CCPEM SIddhanta <[log in to unmask]>

Mon, 20 Oct 2014 04:44:21 +0100

23 lines

Re: Particle polishing segmentation fault

SUBSCRIBE CCPEM SIddhanta <[log in to unmask]>

Mon, 20 Oct 2014 05:07:38 +0100

27 lines

Re: Particle polishing segmentation fault

Ludovic Renault <[log in to unmask]>

Mon, 20 Oct 2014 09:40:20 +0100

84 lines

Re: Particle polishing segmentation fault

SUBSCRIBE CCPEM SIddhanta <[log in to unmask]>

Mon, 20 Oct 2014 09:55:11 +0100

55 lines

Re: Particle polishing segmentation fault

SUBSCRIBE CCPEM SIddhanta <[log in to unmask]>

Mon, 20 Oct 2014 10:09:23 +0100

20 lines

Re: Particle polishing segmentation fault

Qiu-Xing Jiang <[log in to unmask]>

Mon, 20 Oct 2014 22:54:55 +0000

75 lines

Re: Particle polishing segmentation fault

Sjors Scheres <[log in to unmask]>

Tue, 21 Oct 2014 07:48:16 +0100

90 lines

Re: Particle polishing segmentation fault

SUBSCRIBE CCPEM SIddhanta <[log in to unmask]>

Tue, 21 Oct 2014 09:46:39 +0100

35 lines

Re: Particle polishing segmentation fault

Sjors Scheres <[log in to unmask]>

Tue, 21 Oct 2014 10:44:24 +0100

42 lines

Re: Particle polishing segmentation fault

Siddhanta Chakrabarty <[log in to unmask]>

Fri, 24 Oct 2014 02:35:47 +0100

14 lines

Re: Particle polishing segmentation fault

Qiu-Xing Jiang <[log in to unmask]>

Fri, 24 Oct 2014 02:46:26 +0000

35 lines

Re: Particle polishing segmentation fault

Siddhanta Chakrabarty <[log in to unmask]>

Wed, 29 Oct 2014 01:48:59 +0000

17 lines

New Thread

PDBe workshop on programmatic access to macromolecular structure information, 20-21 Nov 2014, Cambridge UK

PDBe workshop on programmatic access to macromolecular structure information, 20-21 Nov 2014, Cambridge UK

Ardan Patwardhan <[log in to unmask]>

Mon, 6 Oct 2014 12:04:01 +0100

5697 lines

New Thread

Post-doc position in Glasgow

Post-doc position in Glasgow

David Bhella <[log in to unmask]>

Thu, 2 Oct 2014 09:53:24 +0000

64 lines

New Thread

Postdoc position Diamond Light Source, UK

Postdoc position Diamond Light Source, UK

Liz Duke <[log in to unmask]>

Mon, 27 Oct 2014 13:32:07 +0000

192 lines

New Thread

Refinment

Re: Refinment

Qiu-Xing Jiang <[log in to unmask]>

Mon, 6 Oct 2014 13:40:22 +0000

127 lines

Re: Refinment

Sjors Scheres <[log in to unmask]>

Mon, 6 Oct 2014 14:43:44 +0100

31 lines

New Thread

Relion FSC curves

Relion FSC curves

Jianhua Zhao <[log in to unmask]>

Mon, 6 Oct 2014 16:46:35 -0400

413 lines

Re: Relion FSC curves

Sjors Scheres <[log in to unmask]>

Mon, 6 Oct 2014 22:00:24 +0100

46 lines

Re: Relion FSC curves

Jianhua Zhao <[log in to unmask]>

Mon, 6 Oct 2014 21:10:57 -0400

51 lines

Re: Relion FSC curves

Sjors Scheres <[log in to unmask]>

Tue, 7 Oct 2014 08:29:30 +0100

73 lines

New Thread

Relion Star labels duplicated

Relion Star labels duplicated

Jose Miguel de la Rosa Trevin <[log in to unmask]>

Tue, 28 Oct 2014 09:49:11 +0100

48 lines

Re: Relion Star labels duplicated

Sjors Scheres <[log in to unmask]>

Tue, 28 Oct 2014 09:05:40 +0000

47 lines

New Thread

Relion: 2D Classification crashing on 2nd iteration

Relion: 2D Classification crashing on 2nd iteration

Ali Khan <[log in to unmask]>

Tue, 21 Oct 2014 18:35:40 +0100

3637 lines

Re: Relion: 2D Classification crashing on 2nd iteration

Sjors Scheres <[log in to unmask]>

Tue, 21 Oct 2014 19:18:44 +0100

2956 lines

Re: Relion: 2D Classification crashing on 2nd iteration

Ali Khan <[log in to unmask]>

Tue, 21 Oct 2014 14:23:12 -0400

3509 lines

Re: Relion: 2D Classification crashing on 2nd iteration

Sjors Scheres <[log in to unmask]>

Tue, 21 Oct 2014 20:15:01 +0100

2339 lines

Re: Relion: 2D Classification crashing on 2nd iteration

Ali Khan <[log in to unmask]>

Wed, 22 Oct 2014 11:03:24 -0400

5255 lines

Re: Relion: 2D Classification crashing on 2nd iteration

Sjors Scheres <[log in to unmask]>

Wed, 22 Oct 2014 19:15:15 +0100

2544 lines

Re: Relion: 2D Classification crashing on 2nd iteration

Sjors Scheres <[log in to unmask]>

Wed, 22 Oct 2014 19:20:04 +0100

2550 lines

New Thread

RELION: 3D classification crash

RELION: 3D classification crash

Juha Huiskonen <[log in to unmask]>

Sat, 11 Oct 2014 15:02:00 +0100

184 lines

Re: RELION: 3D classification crash

Sjors Scheres <[log in to unmask]>

Sat, 11 Oct 2014 17:06:50 +0100

109 lines

New Thread

Relion: Benchmarking Tools

Relion: Benchmarking Tools

Ali Khan <[log in to unmask]>

Thu, 23 Oct 2014 15:35:08 +0100

24 lines

New Thread

Relion: problem when extracting movie particles

Relion: problem when extracting movie particles

Wei Lü <[log in to unmask]>

Thu, 30 Oct 2014 10:21:29 -0700

53 lines

New Thread

Relion: refinement using movie particles

Relion: refinement using movie particles

Wei Lü <[log in to unmask]>

Mon, 27 Oct 2014 23:06:52 -0700

44 lines

Re: Relion: refinement using movie particles

Sjors Scheres <[log in to unmask]>

Tue, 28 Oct 2014 07:26:14 -0000

46 lines

Re: Relion: refinement using movie particles

Sjors Scheres <[log in to unmask]>

Tue, 28 Oct 2014 08:26:34 +0000

68 lines

New Thread

rlnMicrographScaleCorrection is very high

rlnMicrographScaleCorrection is very high

Meyerson, Joel (NIH/NCI) [F] <[log in to unmask]>

Tue, 14 Oct 2014 15:57:11 +0000

25 lines

Re: rlnMicrographScaleCorrection is very high

Sjors Scheres <[log in to unmask]>

Tue, 14 Oct 2014 17:19:06 +0100

34 lines

Re: rlnMicrographScaleCorrection is very high

Meyerson, Joel (NIH/NCI) [F] <[log in to unmask]>

Tue, 14 Oct 2014 16:38:33 +0000

71 lines

New Thread

Segmentation fault during 3D auto-refine

Segmentation fault during 3D auto-refine

Gökhan Tolun <[log in to unmask]>

Tue, 21 Oct 2014 12:25:10 -0400

88 lines

Re: Segmentation fault during 3D auto-refine

Sjors Scheres <[log in to unmask]>

Tue, 21 Oct 2014 18:45:08 +0100

65 lines

New Thread

warning for installation with mvapich2 + gcc

Re: warning for installation with mvapich2 + gcc

Qiu-Xing Jiang <[log in to unmask]>

Mon, 27 Oct 2014 15:35:14 +0000

34 lines

Re: warning for installation with mvapich2 + gcc

Sjors Scheres <[log in to unmask]>

Mon, 27 Oct 2014 15:39:38 +0000

49 lines

Re: warning for installation with mvapich2 + gcc

Qiu-Xing Jiang <[log in to unmask]>

Mon, 27 Oct 2014 16:07:27 +0000

57 lines

New Thread

warnings in compilation

Re: warnings in compilation

Qiu-Xing Jiang <[log in to unmask]>

Sun, 19 Oct 2014 18:04:14 +0000

640 lines

Re: warnings in compilation

Sjors Scheres <[log in to unmask]>

Sun, 19 Oct 2014 19:46:44 +0100

653 lines

New Thread

Weird rings in Relion 2D classificaction

Weird rings in Relion 2D classificaction

Liz Montabana <[log in to unmask]>

Fri, 24 Oct 2014 22:13:44 +0100

4395 lines

Re: Weird rings in Relion 2D classificaction

Sjors Scheres <[log in to unmask]>

Sat, 25 Oct 2014 12:52:46 +0100

42418 lines

Re: Weird rings in Relion 2D classificaction

Liz Montabana <[log in to unmask]>

Mon, 27 Oct 2014 09:05:01 -0700

332 lines

Re: Weird rings in Relion 2D classificaction

Liz Montabana <[log in to unmask]>

Mon, 27 Oct 2014 14:15:20 -0700

351 lines

Re: Weird rings in Relion 2D classificaction

Sjors Scheres <[log in to unmask]>

Mon, 27 Oct 2014 22:13:17 -0000

211 lines

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