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July 2014


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Table of Contents:

.ctf file not being generated in Relion (2 messages)
About Postprocess and masking (2 messages)
Auto-picking question (3 messages)
Autopick FOM crash: buffer overflow detected (5 messages)
create micrograph.star file from Relion1.2-data (5 messages)
ctf estimation used to discard micrographs (2 messages)
error -2d Classification (1 message)
exp_thisparticle_sumweight= nan [oo] relion-1.3 (3 messages)
Hint about auto-picking (2 messages)
Infiniband (2 messages)
LMB EM-course (1 message)
missing particles from .mrcs files (2 messages)
movie processing - relion 1.3 (5 messages)
MTF Curves location on Wiki (1 message)
new faculty position in cryoEM/tomography/cell biology (1 message)
Post-doc position in Leeds (1 message)
python parser for star files? (4 messages)
question of relion_reconstruct (1 message)
Questions about Relion (2D/3D classification and Refinement) (4 messages)
readMRC: Image number ## exceeds stack size ## (2 messages)
relion - preprocessing - query (2 messages)
Relion movie processing crash (3 messages)
relion-1.2 on MacOS10.8: installation trouble (2 messages)
Relion-1.3 autopicking and relion_star_all_micrographs (2 messages)
RELION-1.3 tutorial (1 message)
Relion-1.3: Are your groups large enough? (2 messages)
RELION: make_orientational_distribution_plot.csh (2 messages)
Template scripts and substitution of XXXcommandXXX (2 messages)
Too large class number for the given number of references (2 messages)
Warning:norm_correction & ERROR: cannot find line with Final values in Micrographs/##.log (2 messages)

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Subject Sorted by Subject, Chronologically

From

Date

Size

New Thread

.ctf file not being generated in Relion

.ctf file not being generated in Relion

#AHMED TOFAYEL# <[log in to unmask]>

Mon, 7 Jul 2014 02:05:56 +0000

2933 lines

Re: .ctf file not being generated in Relion

Sjors Scheres <[log in to unmask]>

Mon, 7 Jul 2014 08:47:50 +0100

47 lines

New Thread

About Postprocess and masking

About Postprocess and masking

Tc Cheng <[log in to unmask]>

Fri, 25 Jul 2014 00:27:41 +0100

67 lines

Re: About Postprocess and masking

Sjors Scheres <[log in to unmask]>

Fri, 25 Jul 2014 07:43:56 +0100

88 lines

New Thread

Auto-picking question

Auto-picking question

Gökhan Tolun <[log in to unmask]>

Thu, 10 Jul 2014 16:44:22 -0400

47 lines

Re: Auto-picking question

Max Maletta <[log in to unmask]>

Fri, 11 Jul 2014 01:00:54 +0200

85 lines

Re: Auto-picking question

Sjors Scheres <[log in to unmask]>

Fri, 11 Jul 2014 07:59:22 +0100

65 lines

New Thread

Autopick FOM crash: buffer overflow detected

Autopick FOM crash: buffer overflow detected

Gökhan Tolun <[log in to unmask]>

Fri, 11 Jul 2014 17:56:44 -0400

642 lines

Re: Autopick FOM crash: buffer overflow detected

Sjors Scheres <[log in to unmask]>

Sat, 12 Jul 2014 08:04:17 +0100

314 lines

Re: Autopick FOM crash: buffer overflow detected

Jean-Christophe Taveau <[log in to unmask]>

Mon, 21 Jul 2014 15:49:34 +0100

39 lines

Re: Autopick FOM crash: buffer overflow detected

Sjors Scheres <[log in to unmask]>

Mon, 21 Jul 2014 16:21:36 +0100

52 lines

Re: Autopick FOM crash: buffer overflow detected

Gökhan Tolun <[log in to unmask]>

Mon, 21 Jul 2014 15:11:22 -0400

69 lines

New Thread

create micrograph.star file from Relion1.2-data

create micrograph.star file from Relion1.2-data

Edoardo D'Imprima <[log in to unmask]>

Tue, 1 Jul 2014 14:43:05 +0200

35 lines

Re: create micrograph.star file from Relion1.2-data

Sjors Scheres <[log in to unmask]>

Tue, 1 Jul 2014 14:47:59 +0100

51 lines

Re: create micrograph.star file from Relion1.2-data

Jianhua Zhao <[log in to unmask]>

Tue, 1 Jul 2014 10:01:46 -0400

51 lines

Re: create micrograph.star file from Relion1.2-data

Ludovic Renault <[log in to unmask]>

Thu, 17 Jul 2014 15:40:14 +0100

172 lines

Re: create micrograph.star file from Relion1.2-data

Sjors Scheres <[log in to unmask]>

Thu, 17 Jul 2014 15:48:06 +0100

108 lines

New Thread

ctf estimation used to discard micrographs

ctf estimation used to discard micrographs

Ludovic Renault <[log in to unmask]>

Wed, 16 Jul 2014 12:46:58 +0100

34 lines

Re: ctf estimation used to discard micrographs

Sjors Scheres <[log in to unmask]>

Wed, 16 Jul 2014 12:52:59 +0100

46 lines

New Thread

error -2d Classification

error -2d Classification

Shyamal Mosalaganti <[log in to unmask]>

Thu, 17 Jul 2014 10:24:21 +0000

76 lines

New Thread

exp_thisparticle_sumweight= nan [oo] relion-1.3

exp_thisparticle_sumweight= nan [oo] relion-1.3

Dieter Blaas <[log in to unmask]>

Mon, 7 Jul 2014 08:22:42 +0200

46 lines

Re: exp_thisparticle_sumweight= nan [oo] relion-1.3

Sjors Scheres <[log in to unmask]>

Mon, 7 Jul 2014 08:51:31 +0100

66 lines

Re: exp_thisparticle_sumweight= nan [oo] relion-1.3

Sjors Scheres <[log in to unmask]>

Mon, 7 Jul 2014 10:00:39 +0100

99 lines

New Thread

Hint about auto-picking

Hint about auto-picking

Max Maletta <[log in to unmask]>

Tue, 8 Jul 2014 17:43:37 +0100

22 lines

Re: Hint about auto-picking

Sjors Scheres <[log in to unmask]>

Tue, 8 Jul 2014 18:21:05 +0100

39 lines

New Thread

Infiniband

Infiniband

Amedee des Georges <[log in to unmask]>

Mon, 28 Jul 2014 18:00:15 -0400

108 lines

Re: Infiniband

Wolfgang Lugmayr <[log in to unmask]>

Tue, 29 Jul 2014 16:53:38 +0200

409 lines

New Thread

LMB EM-course

LMB EM-course

Sjors Scheres <[log in to unmask]>

Sat, 26 Jul 2014 04:59:37 +0100

33 lines

New Thread

missing particles from .mrcs files

missing particles from .mrcs files

Martin Smith <[log in to unmask]>

Fri, 11 Jul 2014 11:30:12 -0400

48 lines

Re: missing particles from .mrcs files

Sjors Scheres <[log in to unmask]>

Fri, 11 Jul 2014 16:46:25 +0100

49 lines

New Thread

movie processing - relion 1.3

movie processing - relion 1.3

Ludovic Renault <[log in to unmask]>

Sat, 26 Jul 2014 14:40:02 +0100

63 lines

Re: movie processing - relion 1.3

Sjors Scheres <[log in to unmask]>

Sat, 26 Jul 2014 15:47:13 +0100

51 lines

Re: movie processing - relion 1.3

Ludovic Renault <[log in to unmask]>

Tue, 29 Jul 2014 13:34:45 +0100

83 lines

Movie processing - Relion 1.3

Kai Zhang <[log in to unmask]>

Wed, 30 Jul 2014 13:49:52 +0100

360 lines

Movie processing - Relion 1.3

Kai Zhang <[log in to unmask]>

Wed, 30 Jul 2014 14:05:55 +0100

387 lines

New Thread

MTF Curves location on Wiki

MTF Curves location on Wiki

Gökhan Tolun <[log in to unmask]>

Tue, 29 Jul 2014 10:50:14 -0400

35 lines

New Thread

new faculty position in cryoEM/tomography/cell biology

new faculty position in cryoEM/tomography/cell biology

Per Bullough <[log in to unmask]>

Wed, 30 Jul 2014 17:52:30 +0100

3818 lines

New Thread

Post-doc position in Leeds

Post-doc position in Leeds

Neil Ranson <[log in to unmask]>

Wed, 30 Jul 2014 16:25:44 +0100

46 lines

New Thread

python parser for star files?

python parser for star files?

Sean Connell <[log in to unmask]>

Thu, 31 Jul 2014 07:01:24 +0000

39 lines

Re: python parser for star files?

Steven Ludtke <[log in to unmask]>

Thu, 31 Jul 2014 17:29:19 +1000

70 lines

Re: python parser for star files?

jwwang <[log in to unmask]>

Thu, 31 Jul 2014 16:00:32 +0800

45 lines

Re: python parser for star files?

Steven Ludtke <[log in to unmask]>

Thu, 31 Jul 2014 18:53:42 +1000

80 lines

New Thread

question of relion_reconstruct

Re: question of relion_reconstruct

Sjors Scheres <[log in to unmask]>

Wed, 16 Jul 2014 08:06:39 +0100

44 lines

New Thread

Questions about Relion (2D/3D classification and Refinement)

Questions about Relion (2D/3D classification and Refinement)

Tc Cheng <[log in to unmask]>

Mon, 14 Jul 2014 00:46:22 +0100

53 lines

Re: Questions about Relion (2D/3D classification and Refinement)

Sjors Scheres <[log in to unmask]>

Tue, 15 Jul 2014 08:29:45 +0100

72 lines

Re: Questions about Relion (2D/3D classification and Refinement)

Tat Cheung Cheng <[log in to unmask]>

Wed, 16 Jul 2014 09:16:57 -0400

223 lines

Re: Questions about Relion (2D/3D classification and Refinement)

Sjors Scheres <[log in to unmask]>

Wed, 16 Jul 2014 15:28:57 +0100

130 lines

New Thread

readMRC: Image number ## exceeds stack size ##

readMRC: Image number ## exceeds stack size ##

Yan Zhang <[log in to unmask]>

Fri, 11 Jul 2014 15:18:29 -0400

249 lines

Re: readMRC: Image number ## exceeds stack size ##

Sjors Scheres <[log in to unmask]>

Fri, 11 Jul 2014 22:05:06 +0100

117 lines

New Thread

relion - preprocessing - query

relion - preprocessing - query

Shyamal <[log in to unmask]>

Tue, 8 Jul 2014 10:03:07 +0100

47 lines

Re: relion - preprocessing - query

Ambroise Desfosses <[log in to unmask]>

Tue, 8 Jul 2014 11:53:47 +0200

61 lines

New Thread

Relion movie processing crash

Relion movie processing crash

Jean-Paul Armache <[log in to unmask]>

Mon, 21 Jul 2014 16:54:48 +0100

33 lines

Re: Relion movie processing crash

Juha Huiskonen <[log in to unmask]>

Mon, 21 Jul 2014 17:16:51 +0100

93 lines

Re: Relion movie processing crash

Sjors Scheres <[log in to unmask]>

Mon, 21 Jul 2014 17:37:12 +0100

52 lines

New Thread

relion-1.2 on MacOS10.8: installation trouble

Re: relion-1.2 on MacOS10.8: installation trouble

Yana Gofman <[log in to unmask]>

Tue, 15 Jul 2014 23:26:40 +0100

120 lines

Re: relion-1.2 on MacOS10.8: installation trouble

Sjors Scheres <[log in to unmask]>

Wed, 16 Jul 2014 08:08:31 +0100

133 lines

New Thread

Relion-1.3 autopicking and relion_star_all_micrographs

Relion-1.3 autopicking and relion_star_all_micrographs

Dominic Pollard <[log in to unmask]>

Tue, 1 Jul 2014 13:10:52 +0100

63 lines

Re: Relion-1.3 autopicking and relion_star_all_micrographs

Sjors Scheres <[log in to unmask]>

Tue, 1 Jul 2014 14:56:07 +0100

68 lines

New Thread

RELION-1.3 tutorial

RELION-1.3 tutorial

Sjors Scheres <[log in to unmask]>

Wed, 9 Jul 2014 12:46:31 +0100

30 lines

New Thread

Relion-1.3: Are your groups large enough?

Relion-1.3: Are your groups large enough?

Dieter Blaas <[log in to unmask]>

Wed, 16 Jul 2014 08:30:14 +0200

150 lines

Re: Relion-1.3: Are your groups large enough?

Sjors Scheres <[log in to unmask]>

Wed, 16 Jul 2014 08:13:24 +0100

89 lines

New Thread

RELION: make_orientational_distribution_plot.csh

RELION: make_orientational_distribution_plot.csh

Pierre-Damien COUREUX <[log in to unmask]>

Fri, 25 Jul 2014 09:15:04 +0200

96 lines

Re: RELION: make_orientational_distribution_plot.csh

Sjors Scheres <[log in to unmask]>

Fri, 25 Jul 2014 08:27:14 +0100

54 lines

New Thread

Template scripts and substitution of XXXcommandXXX

Template scripts and substitution of XXXcommandXXX

Andrew Raine <[log in to unmask]>

Tue, 22 Jul 2014 12:31:02 +0100

40 lines

Re: Template scripts and substitution of XXXcommandXXX

Sjors Scheres <[log in to unmask]>

Tue, 22 Jul 2014 12:54:45 +0100

50 lines

New Thread

Too large class number for the given number of references

Too large class number for the given number of references

Yan Zhang <[log in to unmask]>

Sat, 19 Jul 2014 13:36:47 -0400

38 lines

Re: Too large class number for the given number of references

Sjors Scheres <[log in to unmask]>

Sun, 20 Jul 2014 09:12:05 +0100

37 lines

New Thread

Warning:norm_correction & ERROR: cannot find line with Final values in Micrographs/##.log

Warning:norm_correction & ERROR: cannot find line with Final values in Micrographs/##.log

Yan Zhang <[log in to unmask]>

Tue, 15 Jul 2014 14:02:27 -0400

216 lines

Re: Warning:norm_correction & ERROR: cannot find line with Final values in Micrographs/##.log

Sjors Scheres <[log in to unmask]>

Tue, 15 Jul 2014 19:25:01 +0100

118 lines

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