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"Aborted" execution (3 messages)
"Error: FILM did not complete - it probably ran out of memory" (2 messages)
"High pass filter cutoff" ???.... (3 messages)
"quadrupled" T-test (10 messages)
% signal change of differential contrasts (2 messages)
'baseline' in featquery (2 messages)
'display' (from Imagemagick) needs Helvetica font? (7 messages)
'sform matrix set in both images' warning when using flirt (2 messages)
-- colorizing .nii files (5 messages)
-applyxfm in flirt (5 messages)
.msf files & tbss_2_reg (2 messages)
2 error messages (2 messages)
2 group 2x3 ANOVA (2 messages)
2-Sample Paired T-Test (4 messages)
2nd & 3rd level feat (2 messages)
2nd level - one subject (2 messages)
2nd level covariate of interest (2 messages)
2x2 ANOVA - F-Tests (4 messages)
3 column format for EV (4 messages)
3-channel MFAST Question (2 messages)
3.2 design.fsf for 3.3 (4 messages)
3.3 - FSLview on linux SUSE 9.2 (7 messages)
32-bit vs. 64-bit FSL 3.3.7 (4 messages)
4D cope images in FSL 3.3 (2 messages)
64 bit images (2 messages)
64 bit libraries (3 messages)
64-bit avwmerge vs avwmerge++ (2 messages)
64-bit Solaris binaries? (3 messages)
<No subject> (8 messages)
a few more question on group ICA (3 messages)
A problem with FDT (4 messages)
a question about masking in fugue-feat (4 messages)
A question about Sienax/Bet (2 messages)
About ANOVA(3 group) in TBSS (4 messages)
about avwswapdim (2 messages)
about FSLView: how to save multislices into a movie (3 messages)
About the caulation of lesion in multiple sclerosis (1 message)
across-subjects averaged data (6 messages)
Activation List tool? (3 messages)
Adam J Schwarz/IT/GSK is out of the office. (1 message)
adding a covariate to a contrast at the group level (2 messages)
Adding registration to a feat (2 messages)
additional variables (2 messages)
Advice on segmenting ventriles (3 messages)
Affine xform (2 messages)
AIX and "echo -n" (3 messages)
Algorithm behind the cluster local maxima report (2 messages)
alignment (2 messages)
alignment fixes (3 messages)
alignment help (4 messages)
Altix Intel build (1 message)
AMD dual core (1 message)
analysis of visual paradigm data (2 messages)
Anatomical Automatic Labeling or something like this (20 messages)
Anatomical Automatic.. Sorry for posting for the second time (1 message)
Announcement: abstract deadline for fMRI Experience extended! (1 message)
Announcement: fMRI experience meeting Melbourne June 27-30th. (1 message)
Announcing FSL 3.3 Debian/Ubuntu packages (17 messages)
Another problem with FDT (7 messages)
ANOVA - understanding tutorial (3 messages)
ANOVA with repeated measures (2 messages)
anova, interaction (2 messages)
AP, or RL foldover-direction? (3 messages)
application of fast's -oba, -l, and -i options (2 messages)
Apply 3D FLIRT transform to 4D file (3 messages)
applyxfm4D woes (2 messages)
assessing siena PBVC values (2 messages)
Attempt to get clusters and local maxima from .nii.gz file (2 messages)
avwchfiletype problem (3 messages)
avwmath++: kernel operations (14 messages)
avwmaths and pixdim (2 messages)
avwmaths question (9 messages)
avwmaths++ -inm <mean> : intensity normalisation (3 messages)
avwmaths++ changing pixdims? (3 messages)
avwmaths++ morphological ops (3 messages)
avwmeant and filtered functional data (6 messages)
Avwmeants & z/tstats (3 messages)
avwmerge and tbss (5 messages)
avwmerge of 4D data (4 messages)
avwmerge rescaled the intensity? (3 messages)
avwmerge Segmentation fault (1 message)
avwrange - set [min,max] range of volume (3 messages)
avwswapdim and fslview wierdness (3 messages)
avwswapdim differences on different linux boxes (1 message)
AW: AW: [FSL] DICOM to Analyze conversion (2 messages)
AW: AW: [FSL] Motion correction in Siemens Symphony... (1 message)
AW: [FSL] Anatomical Automatic Labeling or something like this (1 message)
AW: [FSL] AW: [FSL] AW: [FSL] AW: [FSL] Calculating FA after probabilistic tractograp hy (1 message)
AW: [FSL] AW: [FSL] AW: [FSL] Calculating FA after probabilistic tractograp hy (2 messages)
AW: [FSL] AW: [FSL] Calculating FA after probabilistic tractograp hy (2 messages)
AW: [FSL] AW: [FSL] FDT in spinal cord (1 message)
AW: [FSL] AW: [FSL] FSL ignores intensity scaling in SPM Analyze images (1 message)
AW: [FSL] AW: [FSL] How to visualize the fMRI result by using 3D brain map instand of 2D slices? (1 message)
AW: [FSL] AW: [FSL] melodic high pass filter cutoff (2 messages)
AW: [FSL] AW: [FSL] ProbTrack on a tumor patient (1 message)
AW: [FSL] AW: [FSL] Randomise problems (1 message)
AW: [FSL] AW: [FSL] Registration question (1 message)
AW: [FSL] AW: [FSL] Siemens Allegra MDDW6/12 (1 message)
AW: [FSL] AW: [FSL] small SIENA changes (2 messages)
AW: [FSL] BEDPOST (1 message)
AW: [FSL] BET tips and tricks (1 message)
AW: [FSL] Calculating FA after probabilistic tractograp hy (1 message)
AW: [FSL] checking alignment in fslview/AFNI (1 message)
AW: [FSL] Colour bar for slicer (1 message)
AW: [FSL] Comparing 2 different headcoils using MELODIC (1 message)
AW: [FSL] cortical anatomical mask (1 message)
AW: [FSL] couple of other things about f-test. (1 message)
AW: [FSL] DICOM to Analyze conversion (5 messages)
AW: [FSL] DTI quality assurance (2 messages)
AW: [FSL] DtiFit / bedpost (1 message)
AW: [FSL] FA pipeline (2 messages)
AW: [FSL] FDT in spinal cord (2 messages)
AW: [FSL] few more things about f-test. (1 message)
AW: [FSL] FILM error (2 messages)
AW: [FSL] Forthcoming release of FSL v3.3 - What platforms? (1 message)
AW: [FSL] FSL ignores intensity scaling in SPM Analyze images (13 messages)
AW: [FSL] FSL Mac 3.2 (1 message)
AW: [FSL] fugue - time for creating voxel shift map, DTI-specific questions (1 message)
AW: [FSL] GLM GUI setup (1 message)
AW: [FSL] GLM problem in window XP (3 messages)
AW: [FSL] How to visualize the fMRI result by using 3D brain map instand of 2D slices? (3 messages)
AW: [FSL] importing nii rois from afni (2 messages)
AW: [FSL] Language Paradigm (1 message)
AW: [FSL] Loading datasets in FEAT (2 messages)
AW: [FSL] MCFLIRT with difussion images... (1 message)
AW: [FSL] melodic high pass filter cutoff (2 messages)
AW: [FSL] Motion correction in Siemens Symphony... (3 messages)
AW: [FSL] motion correction report (1 message)
AW: [FSL] NIfTI converter (2 messages)
AW: [FSL] Preprocessed data from SPM in ICA (1 message)
AW: [FSL] ProbTrack on a tumor patient (2 messages)
AW: [FSL] randomise (1 message)
AW: [FSL] Randomise problems (1 message)
AW: [FSL] Registration question (3 messages)
AW: [FSL] SEM (1 message)
AW: [FSL] Siemens Allegra MDDW6/12 (2 messages)
AW: [FSL] slice timing? (1 message)
AW: [FSL] small SIENA changes (2 messages)
AW: [FSL] smooth -- command line input (2 messages)
AW: [FSL] some basic questions concerning DTI bedpost (1 message)
AW: [FSL] Specifying analysis ROI mask image for Melodic (1 message)
AW: [FSL] tensor-PICA method (2 messages)
AW: [FSL] uncontroversial thresholds for fixed-effects design, highpass cutoff, and more (1 message)
AW: [FSL] upgrade problem opening FEAT (1 message)
AW: [FSL] VBM using Siena (1 message)
AW: [FSL] Visualization of Atrophy (1 message)
AW: [FSL] Voxelwise SIENA Statistics (1 message)
AW: [FSL] waypoint and FSLview (1 message)
AW: [FSL] waypoints and FSLview (2 messages)
B0 Unwarping... (3 messages)
baseline (2 messages)
Basic ICA Questions (3 messages)
Basis functions modeling neuronal effects? (3 messages)
BEDPOST (8 messages)
BEDPOST (exception) (4 messages)
Bedpost Error (6 messages)
Bedpost error, unexpected end of file (2 messages)
bedpost modification for multiprocessor host (2 messages)
bedpost paralellization (2 messages)
Bedpost Parallel Processing Error (5 messages)
bedpost parallelization on Altix (3 messages)
beginner questions about 'randomise' (2 messages)
Beginner's question on Error in FEAT (2 messages)
BET (2 messages)
bet -c and -r options (3 messages)
BET and avwroi problems (8 messages)
BET and Computed Tomography (3 messages)
BET and SUSAN coordinate system (10 messages)
BET binary mask (2 messages)
BET for mouse brain extraction (3 messages)
BET leftovers in SIENA (2 messages)
BET tips and tricks (3 messages)
BET2 - technical report (6 messages)
BET2 accuracy/errors (2 messages)
BET2 initial surface (2 messages)
BET2 references (2 messages)
bet2 Surface output (1 message)
betall script (2 messages)
betsurf output (2 messages)
betsurf output (binary package bug) (1 message)
betsurf output (debian binary package bug) (3 messages)
Bias correction? (2 messages)
bit-depth of Flirt output (6 messages)
brain atlas with fxnal correlates (3 messages)
brain data as a first-level EV (7 messages)
brain model for your desk (5 messages)
Brevia: Timeseries & avwmaths (4 messages)
Brodmann maps for MNA template (3 messages)
Bug Report for afni2avw and avw2afni (5 messages)
bugfix for FSLView on Cygwin (1 message)
Build Errors 64 bit redhat (4 messages)
building FSL (probs with extras) (2 messages)
Building FSL for 64 Bit Redhat (2 messages)
building fsl/flsview (2 messages)
builing fsl 3.3.3 from source on gentoo with gcc 3.4.4 (3 messages)
bvecs and bvals (5 messages)
Calculate % signal change per voxel (5 messages)
Calculation of PPheight (3 messages)
call bet2 from matlab under windos XP (2 messages)
Can FSL do the deconvolution for single time series? (8 messages)
Can not find a problem in dti data (2 messages)
Can't plot with an empty y range! (4 messages)
cannot open FSLView (2 messages)
Cannot start FSL View (1 message)
changes in signal intesity across time within a trial (2 messages)
changing lut in slicer (6 messages)
checking alignment in fslview/AFNI (1 message)
Cluster P Threshold (4 messages)
Cluster report for tbss randomise output (2 messages)
cluster size thresholding (2 messages)
cluster thresholding experimentations: my data look too nice! (5 messages)
Cluster thresholding using randomise (5 messages)
clustered sparse sampling (1 message)
Cognitive Neuroscience of Memory; Full time Research Assistant position available, Department of Psychology, University of Texas, Austin (1 message)
Colour bar for slicer (1 message)
colour render problem (3 messages)
Combining dti and functional activations (5 messages)
compare activation across different designs (2 messages)
Compare two fMRI studies... (2 messages)
comparing 2 designs (2 messages)
Comparing 2 different headcoils using MELODIC (1 message)
comparison of tract sizes (3 messages)
compatibility of TBSS with FreeSurfer/FreeDiffusion (2 messages)
Compiling FSL (2 messages)
Compiling fslview for 64-bit FC5 (6 messages)
Compiling on Solaris 10 (8 messages)
complex data set to analyze (10 messages)
Compling fslview for 64-bit FC5 (2 messages)
Composing affine matrix (2 messages)
computing variability in resting baseline MR signal (2 messages)
Confound Matrix in Randomise (4 messages)
connections between gray matters (2 messages)
connectivity-based seedmask classification in two targets (4 messages)
consistency of siena across different plateform (2 messages)
contrast against resting baseline (3 messages)
contrast_mgr "Uncaught exception" error (2 messages)
contrast_mgr error message (2 messages)
Control over output file types - fsl 3.2 (3 messages)
conversion from Analyze to DICOM (2 messages)
convolution (6 messages)
coordinate handedness (5 messages)
COPE Images and Percent Signal Change (2 messages)
copes and psc (4 messages)
Corpus Callosum Segmentation (2 messages)
Correcting for through slice motion (3 messages)
correcting inhomogeneity: fast vs. MNI_N3 (2 messages)
Correction to Windows Xp Bash Error Post (1 message)
correlation analysis of FA-Data with FSL (2 messages)
correspondance between FEAT cluster tables and fslview coordinates (3 messages)
cortical anatomical mask (2 messages)
could not open bvec und bval files (2 messages)
couple of other things about f-test. (2 messages)
covariate and ROI analysis (2 messages)
covariate in first-level FEAT analysis (3 messages)
Covariates in higher-level analysis (3 messages)
covariates with skeletonized FA data (2 messages)
Crash during tbss_3_postreg (2 messages)
Creating Pstat images for FDR (1 message)
Custom apriori maps in fast (2 messages)
cut a thick slice out of the middle from a high-res volume (2 messages)
Cygwin 1.5.19 breaks FSL, fix? (3 messages)
Cygwin FEAT Problem (3 messages)
Cygwin File Input/Output Path Problem (1 message)
cygwin problem resolved....for the moment.... (2 messages)
cygwin\tmp directory (2 messages)
data convert (2 messages)
data folders (2 messages)
data format (4 messages)
Data Type of NiFTI (3 messages)
de-activation (2 messages)
dear god (7 messages)
Defining ROI of known size (2 messages)
definition of "baseline" - 'mean signal intensity' or 'rest period'? (1 message)
Delete Volumes in FEAT (6 messages)
design files (2 messages)
design? (2 messages)
Development cognitive neuroscience position at UCLA (3 messages)
dewarping sagittal epis with Fugue (4 messages)
DICOM conversion problems using mri_convert (7 messages)
DICOM to Analyze conversion (3 messages)
dicom to nifti converter (7 messages)
diff to structural reg (2 messages)
diffusion model used in bedpost/3D view (2 messages)
DISPLAY environment variable (2 messages)
Doctoral and postdoctoral position, Berlin, Germany (1 message)
drawing ROIs in FSLview (2 messages)
DTI (3 messages)
DTI files format (2 messages)
DTI quality assurance (9 messages)
DTI resolution (8 messages)
DTI ROI analysis (4 messages)
DTI verification (2 messages)
DTI visualization tool? (4 messages)
DtiFit (5 messages)
DtiFit / bedpost (1 message)
DTIFIT blank image problem with linux (5 messages)
DTIFit gives 0 values (2 messages)
DTIfit problem (5 messages)
dtifit trouble (4 messages)
Dual core Athlons and FEEDS (2 messages)
DWI quality (1 message)
dyadic vectors (2 messages)
Eddy Correction (4 messages)
eddy correction in MATLAB? (1 message)
eddy current (2 messages)
Eddy_correct (1 message)
eddy_correct with sinc interpolation (2 messages)
Edge artifact w/ DTIFIT (3 messages)
effective connectivity-attention source-attention sites (1 message)
Eigenvalues in 16bit (3 messages)
Empty EVs (2 messages)
environment variables (2 messages)
EPI Distortion Correction (2 messages)
Erase some fMRI images (motion correction problems) (2 messages)
Error (5 messages)
Error building fslview (3 messages)
Error compiling on Solaris (6 messages)
error during feat (2 messages)
error for feeds test (2 messages)
Error in Flame 1 & 2 (2 messages)
error running Feat (8 messages)
error running first level Feat (1 message)
Error while exiting bedpost (2 messages)
error writing volume (4 messages)
Errors using updatefeatreg (4 messages)
EVs (more on..) (5 messages)
EVs specification (FEAT) (5 messages)
Exceptions while running bedpost (7 messages)
extending tripled two-group difference (3 messages)
F-test across separate waveform components (2 messages)
F-Test and FLOBS (2 messages)
f-test for comparing models (4 messages)
F-test question (2 messages)
F-values of ANOVA (2 messages)
FA pipeline (8 messages)
FA values exceed 1 (2 messages)
fail in installation (3 messages)
Failure in Talairach & Tournoux Atlas (1 message)
False Discovery Rate and HigherLevel Anova (2 messages)
FAST and NIFTI (6 messages)
Fast and Sienax (7 messages)
fast error (1 message)
FAST GUI Output (4 messages)
FAST leaving out cerebellum (1 message)
FAST options (partial vol vs. probability) (2 messages)
FDR (2 messages)
FDR --conservative option (2 messages)
FDR and Cluster (2 messages)
FDR interpretation (3 messages)
FDR q-value and other details (2 messages)
FDR threshold of zero (2 messages)
FDR Thresholding Wisdom needed (3 messages)
FDT (2 messages)
FDT - Registration (2 messages)
FDT and DTI acquired using Derek Jones' method (3 messages)
FDT and number of directions (2 messages)
FDT and registration (4 messages)
FDT dtifit output formats (2 messages)
FDT Eddy current correction (2 messages)
FDT in spinal cord (3 messages)
FDT issues (3 messages)
FDT Orientation Problems (7 messages)
FDT problem (3 messages)
FDT problems (2 messages)
Fdt results in different spaces (6 messages)
FDT with varying scan parameters (2 messages)
FDT/ProbTrack waypoint mode (5 messages)
fdt_matrix (3 messages)
FEAT analysis problem... (3 messages)
feat doesnt start (3 messages)
FEAT error (2 messages)
Feat error-new version (2 messages)
FEAT errors in FSL 3.3.7 macosx 64-bit (2 messages)
FEAT for generic non-fMRI stats (2 messages)
Feat Full Model Setup (1 message)
FEAT Model with motion parameters - analysis stops (4 messages)
FEAT post stats (3 messages)
FEAT pre-stats (4 messages)
FEAT setup file too old?? (2 messages)
FEAT-error (3 messages)
featquery % signal change (2 messages)
Featquery and % BOLD (2 messages)
Featquery and copes (2 messages)
Featquery and post stat (2 messages)
Featquery and ROIs (4 messages)
featquery coordinates (2 messages)
Featquery count (2 messages)
Featquery question (2 messages)
featquery thresholding (5 messages)
Featquery versions (4 messages)
featquery voxel coordinates (2 messages)
featquery without web browser pop-up (2 messages)
featregapply question (2 messages)
Fedora 5 download (2 messages)
Fedora4 Binaries under Fedora6 ? (1 message)
feeds (4 messages)
FEEDS error report for SIENAX (2 messages)
FEEDS: Bedpost Error in the log file (2 messages)
few more things about f-test. (1 message)
Fiber tracking w/ 6 directions (2 messages)
file links (2 messages)
File Path Error with Cygwin (11 messages)
file size doubles after only doing slice timing in FSL (2 messages)
file sizes, data types and TRs (3 messages)
files in "tmp" directory... (4 messages)
FILM error (1 message)
FILM error message (3 messages)
filter settings in melodic (2 messages)
filtered func data (2 messages)
filtered_func & Peri-Stimulus plot (6 messages)
finding ROI (4 messages)
FIR Model Timing Question (2 messages)
first slice in slice timing correction (4 messages)
Fixed bugs in Debian package (1 message)
flame abort problem (6 messages)
FLAME on Structurals from Command Line (5 messages)
Flame stage 1+2 error (4 messages)
Flame-Abort error (3 messages)
Flim prewhitening MEMORY issues (2 messages)
FLIRT (3 messages)
Flirt "Abort" (2 messages)
flirt "bad data file" error (3 messages)
FLIRT -- 12 dof great; 6 dof dreadful? (2 messages)
FLIRT brain-head with >6 parameters (2 messages)
Flirt Cost Function: LEFT/RIGHT Orientation Solution? (2 messages)
flirt intermodal small volume help (3 messages)
FLIRT NiFTI sform and SPM (3 messages)
FLIRT not-reproducible results on and across multiple platforms (9 messages)
FLIRT not-reproducible results on and across multiple platforms - correction (1 message)
FLIRT problem.. (12 messages)
flirt registration problem (4 messages)
flirt schedule (3 messages)
Flirt version 5.2 segmentaion fault (2 messages)
FLIRT Weighting Volumes values... (2 messages)
flirt with only a few fmri slices (2 messages)
Flirt, qform and origin (2 messages)
FLIRT-Abort (5 messages)
flobs (4 messages)
fMRI - T1 volume coregistration (5 messages)
FMRI estimability paper & technical report (1 message)
fMRI Experience Abstract Deadline - 3 day warning. (1 message)
fMRI Physicist (1 message)
fMRI to standard registration problem (2 messages)
fNIRS / Optical Imaging Data Analysis (2 messages)
follow up non-FA TBSS (2 messages)
follow-up questions about F-test's (2 messages)
force orientation does not work after -deleteorientation (5 messages)
forceneurological (4 messages)
Forthcoming release of FSL v3.3 - What platforms? (17 messages)
FRD ttologp output question (4 messages)
Freesurfer for T2 MRI structural analysis (2 messages)
FSL & MRIcro (3 messages)
FSL 2007 Course? (3 messages)
FSL 3.3 (4 messages)
FSL 3.3 - minor update (FSLView sources and user doc) (2 messages)
fsl 3.3 and freesurfer 3 (5 messages)
FSL 3.3 binaries available for AMD64 (SuSE 10 x86_64) (1 message)
fsl and mac (3 messages)
FSL Course Lectures (4 messages)
FSL Debian package provides FSLView (3 messages)
FSL Debian package repository update (3 messages)
FSL Digest - 1 Aug 2006 to 2 Aug 2006 (#2006-199) (1 message)
FSL Digest - 7 Mar 2006 to 8 Mar 2006 (#2006-62) (2 messages)
FSL Fedora 5 (2 messages)
FSL for Intel Mac (2 messages)
FSL ignores intensity scaling in SPM Analyze images (1 message)
FSL install process requests (2 messages)
FSL installation (7 messages)
fsl installation in cygwin on PC (1 message)
FSL installation on unix (2 messages)
FSL installation problem with tk.tcl (2 messages)
FSL Mac 3.2 (3 messages)
fsl on Linux (5 messages)
FSL on Mac Pro (2 messages)
FSL on Redhat Enterprise 4 (1 message)
FSL output cannot be displayed in SPM (3 messages)
FSL Questions re: FA map and Bedpost (2 messages)
FSL reference paper... (3 messages)
FSL report (2 messages)
FSL software problem (2 messages)
FSL source installation for fedora 6 (1 message)
FSL view (4 messages)
FSL View Configuration (2 messages)
fsl-error (2 messages)
fsl-feeds errors (4 messages)
fsl-GUI-problem (1 message)
fsl-viewing problem in TBSS-course data (2 messages)
fsl3.3 affine registration (6 messages)
FSL3.3 and missing contrasts (2 messages)
FSL3.3 and PowerPC G5 OSX 10.3.9 (4 messages)
FSL3.3 on Redhat8? (2 messages)
fslview (11 messages)
FSLVIEW -- error w/in CYGWIN OS (1 message)
FSLVIEW / nifti / analyze orientation (7 messages)
fslview 3.2 vs 3.3 (2 messages)
FSLview and waypoint masks (2 messages)
fslview Automator actions for Mac OS X tiger? (2 messages)
fslview blind? (4 messages)
FSLview compilation (2 messages)
fslview compiling - qwtplugin.so (1 message)
fslview dti 4D data question (2 messages)
fslview error on MAC OS X Panther (2 messages)
fslview file menu missing (2 messages)
FSLview image display (6 messages)
fslview installation (3 messages)
FSLView intensity scaling (1 message)
fslview operating slowly (6 messages)
fslview orientation (4 messages)
fslview projection convention (3 messages)
fslview question (2 messages)
fslview2.4 with fsl3.3? (2 messages)
FSLView: Weird display in ortho view (2 messages)
fugue - time for creating voxel shift map, DTI-specific questions (1 message)
Fugue dwell time (4 messages)
Fugue dwell time (fwd) (2 messages)
fugue question (1 message)
Fugue questions (5 messages)
fugue under feat (2 messages)
FUGUE with SENSE (4 messages)
FW: randomise (2 messages)
Fwd: Any interest in database for managing scanner facility? (1 message)
Fwd: [Cdfi] Frontiers in Neuroimaging Symposium Announcement (1 message)
Fwd: [SPM] Neuroimaging Validation Data Set Website (3 messages)
G5 and Core Duo Mac interoperability (2 messages)
Gamma and Beta files (3 messages)
gcc4 Patch (6 messages)
GE DWI dicom to nii.gz (3 messages)
General questions on GLM and file type (3 messages)
GLM combinations (1 message)
GLM GUI setup (6 messages)
GLM problem in window XP (1 message)
GLM setup in FEAT? (3 messages)
gradient directions and BET binary mask (2 messages)
Group Analysis and FreeSurfer. (3 messages)
Group analysis is crashing after update to 3.3 (5 messages)
group fixed-effects analysis (4 messages)
group ICA (2 messages)
group mask question (7 messages)
Group statistical maps (3 messages)
group-ICA approaches: recent techrep and Neuroimage 2006 paper (3 messages)
Has FEEDS been updated? (2 messages)
Help with problem at higher level ANOVA analysis (6 messages)
hemisphere volume change (2 messages)
high level cope & pe (7 messages)
high-res MNI brain (3 messages)
higher level A>B between groups (4 messages)
higher level analyses (2 messages)
higher level analysis (5 messages)
Higher-level Covariates (2 messages)
How to assess positive and negative activations separately using FEAT (2 messages)
How to caculate the lesion volume in MRI with FMRIB? (4 messages)
How to change Analyze image voxel sizes from negative to pos itive (2 messages)
How to change Analyze image voxel sizes from negative to positive (4 messages)
How to deal with the last volume of Philips DTI data using FSL (2 messages)
how to interpret tbss results (2 messages)
how to interpretate the L-R of the results (2 messages)
how to make design files (2 messages)
How to use FSL to study After-effect of fMRI (2 messages)
How to visualize the fMRI result by using 3D brain map instand of 2D slices? (1 message)
HRF and group analysis (2 messages)
hrf for event related (2 messages)
Huge difference of FA between Philips and Siemens, Why? (3 messages)
I have a Similar problem Re: reg_standard related errors (3 messages)
IC's % varinace explained (2 messages)
ICA Discrepancies (2 messages)
ICA group analysis and repeatibilty (1 message)
ICA problem (11 messages)
ICA with FA data (4 messages)
ICA/tensor-ICA and p-values (5 messages)
image orientation in TBSS (2 messages)
Image Registration (2 messages)
image reorientation (4 messages)
img2imgcoord (2 messages)
importing nii rois from afni (1 message)
improving registration (1 message)
Inconsistent tractography results (2 messages)
incorrect origin in zstat maps (2 messages)
Independent Pairs that I wish were paired (2 messages)
index error in flame (16 messages)
Init mat file and DOF change (3 messages)
INMEDX Variable Missing for Renderstats (2 messages)
install (4) (1 message)
install Fedora 5 (2 messages)
install weirdnesses (6 messages)
Installation (2 messages)
Installation of FSL in Windows XP (2 messages)
Installation on Mac OS 10.4.7 (5 messages)
installation(3) (5 messages)
Installing FSL (2 messages)
Installing FSL in Mac Intel (8 messages)
Installing FSL in Mac Intel Core Duo (2 messages)
installing FSL on an Intel Mac (2 messages)
installing FSL on G5 Mac (2 messages)
Installing FSLview: QWT (2 messages)
Inter-subject image intensity normalization (5 messages)
interaction ANOVA (2 messages)
invalid design.con (4 messages)
ip altering header information (1 message)
ip altering header information - more info (3 messages)
IP and border expansion:meaningful voxels? (3 messages)
ip reference (4 messages)
IRTK parameter questions (3 messages)
Is it possible to change BET a little? (3 messages)
ISMRM (2 messages)
itanium compile (1 message)
Job - fMRI - Systems Administrator and Applications Specialist (1 message)
Job Announcement (2 messages)
job opening (1 message)
Job Opening - fMRI Research Technician at the University of Rochester (1 message)
Language Paradigm (1 message)
latest version of FSL (5 messages)
Lectureship in Neural Imaging, Belfast (1 message)
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Lectureship/Senior Lectureship in sensory or cognitive neuroscience using micro-electrode recording and/or fMRI (1 message)
Left and right hemi white volume (2 messages)
libmng.so.1 (1 message)
libqwt.so.4.2.0 has no symbols (1 message)
Library problem (2 messages)
linear contrast with only three levels in a parametric design (4 messages)
list of dicom to nifti converters in faq (6 messages)
Loading datasets in FEAT (5 messages)
lower limit for floating point values (2 messages)
LowPass filtering (8 messages)
Mac crashes when using film or melodic with data on server (4 messages)
Mac FSL Installation (2 messages)
macbook pro + intel processor (5 messages)
make clean (2 messages)
making binary mask (5 messages)
Making sense of SENSE factor with unwarping (4 messages)
malloc problem at the end of bedpost (6 messages)
Mapping issue (3 messages)
mapping TBSS results on 3D surface rendering (2 messages)
MASK (1 message)
Mask erosion (was Re: Edge artifact w/ DTIFIT) (3 messages)
mask recognition by featquery within FSL 3.2 and windows (2 messages)
Mask-Melodic (7 messages)
masking cluster (2 messages)
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mcflirt interpolation (5 messages)
MCFLIRT motion correction report (2 messages)
mcflirt on large motion (2 messages)
mcflirt question (2 messages)
MCFlirt refvol question (2 messages)
MCFLIRT with difussion images... (1 message)
mean FA in FTD tractography (2 messages)
mean highres in FEAT (2 messages)
mean Z scores and cluster analysis (2 messages)
meaning of terms in the transformation matrix (6 messages)
meaning of varcope-behavior correlation (1 message)
meaning of varcope-behavior correlations (2 messages)
Melodic (5 messages)
MELODIC command-line/GUI options (6 messages)
Melodic component (4 messages)
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Melodic fails during IC estimation - FSL 3.3 (WAS : RE: [FSL] melodic fails when doing PCA) (3 messages)
melodic fails when doing PCA (3 messages)
melodic failure (8 messages)
Melodic for removing noise and small components (4 messages)
melodic group spectra (2 messages)
melodic high pass filter cutoff (3 messages)
MELODIC output (5 messages)
MELODIC results from MELODIC GUI vs from FEAT GUI (2 messages)
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Merging DW runs (6 messages)
mfast (4 messages)
mfast fails on 64-bit (6 messages)
MFAST Reference (2 messages)
Mfast stack dump (2 messages)
miscmaths won't compile (2 messages)
Missing Voxel Data (9 messages)
MNI to Talairach (3 messages)
MNI to Talairach: Please DON'T (4 messages)
Model rest periods? (11 messages)
Model Setup (2 messages)
modeling effects of learning over the time of experiment (2 messages)
Modeling Empty Condition in some Subjects (2 messages)
modelling linear trend in EV or Contrast, any difference? (7 messages)
Motion as additional parameter (4 messages)
Motion correction (2 messages)
Motion correction guideline: task-related motion (4 messages)
Motion correction guidelines --and task related motion (2 messages)
Motion correction in DTI data (5 messages)
Motion correction in Siemens Symphony... (2 messages)
motion correction questions... (5 messages)
motion correction report (1 message)
motion correction report... (2 messages)
Motion correction topic question... (3 messages)
Motion parameter orthogonalisation (2 messages)
MRI compatible Specs (1 message)
mri_segstats and % signal change (2 messages)
Multi CPU friendly processing (2 messages)
multi subjects multi sessions second level analysis (3 messages)
Multi-level feat problem (2 messages)
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multimodal imaging programmer position available (1 message)
multiple subject comparison of ICA's (3 messages)
multiple subject comparison of ICA's (fwd) (4 messages)
negative bold contrasts (3 messages)
negative contrasts with 1-sample test in randomise (2 messages)
neonate TBSS analysis (4 messages)
Neuroimaging Multiple Comparisons & Thresholding Discussion List (1 message)
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NeuroSlice brain model (1 message)
new fMRI discussion list (1 message)
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New option in TBSS - running on non-FA data (4 messages)
New techreps on resting state networks and voxel-based FA analysis (3 messages)
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next FL course... (2 messages)
NIFTI and DTI (4 messages)
NIFTI conversion (2 messages)
NIfTI converter (3 messages)
NIfTI spatial coordinates as starting estimate for FLIRT (3 messages)
NIFTI to AFNI (7 messages)
nii.gz to DICOM color conversion... (2 messages)
No "all_FA_skeletonised" during TBSS_4_prestats (2 messages)
noise reduction using ICA (2 messages)
non-FA TBSS (4 messages)
non-linear registration (2 messages)
non-linear smoothing of diffusion images (3 messages)
non-memory sources of FILM error (1 message)
number of contrasts & correction for multiple comparisons (4 messages)
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Old randomise problems solved (2 messages)
one condition above them all (4 messages)
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order of independent components (5 messages)
orientation question (2 messages)
orientation x registration question (10 messages)
Orphaned wish8.4 processes (5 messages)
orthogonalising motion correction wrt model (2 messages)
orthogonalize - "transitive"? (2 messages)
orthogonalizing variables (computing partial correlations) (2 messages)
OS X, memory problem (2 messages)
OSX.4.7 install (3 messages)
Output files (2 messages)
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Outside of the brain activation (5 messages)
Overlay FSL FEAT group image on FreeSurfer average brain (1 message)
Package update (was: Re: Announcing FSL 3.3 Debian/Ubuntu packages) (1 message)
Padding Images (6 messages)
parallelising bedpost (5 messages)
parallelizing (3 messages)
passing BET'd brain to SIENA (1 message)
PBVC computation : a 30 factor ?? (5 messages)
PCA in Melodic (2 messages)
PCA of concatenated subjects IC maps (10 messages)
Peristimulus Plot (5 messages)
PEs, COPES and ZSTATs (2 messages)
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PhD position in visual Neuroscience, neuropharmacology, and fMRI (1 message)
PhD studentship University of Manchester (1 message)
Philips data DTI (1 message)
Philips to nifti converter on unix system? (7 messages)
Pittsburgh Brain Activity Interpretation Competition (1 message)
plots not created during FEAT (2 messages)
plotting percent signal change across time (2 messages)
Pls help : Doubt regarding setting path using FSLDIR (2 messages)
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pointflirt: "standard-space" or "scaled" coords? (4 messages)
Poor registration to MNI152 after tbss_3_postreg (6 messages)
position available at UCLA (1 message)
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Post-Bedpost fix for wrong bvecs? (2 messages)
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Pre-Threshold Masking (FEAT) in reverse (3 messages)
Pre-threshold masking... (4 messages)
prelude - unwrapping phase maps (8 messages)
Prelude not unwrapping phase images completely (3 messages)
prelude-fugue (2 messages)
prelude-fugue and dti distortion correction (2 messages)
prelude-fugue question (2 messages)
prelude/fugue (in c# minor) (2 messages)
Prelude/Fugue EPI unwarping in 4 easy steps.. (5 messages)
premature end of expression (5 messages)
Preprocessed data from SPM in ICA (10 messages)
problem in cygwin (2 messages)
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problem running FSL on a intel macbook (black) (2 messages)
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problem with randomise (TBSS) (2 messages)
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problem with TBSS_1_preproc (2 messages)
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ProbTrack on a tumor patient (1 message)
probtrack output (3 messages)
processing without normalizing to the standard brain (2 messages)
psychophysiological interaction (3 messages)
pulse sequence (1 message)
quantifying activation (2 messages)
Question about averaging diffusion images (2 messages)
question about computing percent signal change (2 messages)
Question about ProbTrack (8 messages)
question about registration dof (2 messages)
question about the orientation in coronal scanned images (2 messages)
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question on FLIRT (2 messages)
question on FSL design files (4 messages)
question re: eddy_correct (2 messages)
question regarding editing registration with FSL (4 messages)
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question regarding two ways of going about subject-level Feat analysis (2 messages)
questions about F-test's (3 messages)
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questions re: a 1st and 2nd level model that's getting sticky for me (6 messages)
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randomise (1 message)
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randomise cluster threshold (2 messages)
randomise for FA statistic (2 messages)
randomise library problem (4 messages)
randomise library problem with CentOS 4.3 x86_64 (3 messages)
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randomise question (2 messages)
Randomise questions (6 messages)
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read errors (2 messages)
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regestration problem (2 messages)
regestration smoothing kernel (2 messages)
Register mean_func to EPI (2 messages)
Registration (4 messages)
Registration can only be applied after Bedpost has been run. (2 messages)
registration of AAL mask (5 messages)
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regression analysis on FA data (2 messages)
regressor height for custom model (2 messages)
reg_standard (2 messages)
remove tongue and spinal cord from T1 image (6 messages)
remove_ext error (2 messages)
Removing components of no-interest with melodic (1 message)
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Removing unneeded files to save on diskspace (2 messages)
res4d corruption? (4 messages)
Resampling with Flirt (2 messages)
Research Assistant Position in Functional Neuroimaging at UC San Diego (1 message)
Research Associate position at the University of Cambridge (1 message)
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reverse spatial transformation (3 messages)
ROI (4 messages)
roi analysis (3 messages)
ROI extraction from FA maps (2 messages)
ROI selection for probtracking. (inverse transformation) (2 messages)
rotate brain for a few degree (4 messages)
RT as covariate within third level analysis contrasting conditions (4 messages)
Run Feeds for FSL evaluation (3 messages)
running bedpost on dual Windows XP (3 messages)
running datatype-specific programs (4 messages)
running FEEDS (2 messages)
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runtime priority for bedpost (5 messages)
scalp surfaces - mri_watershed vs betsurf (1 message)
Script the design.fsf or change first-level structure? (3 messages)
Scripting (6 messages)
Second level Analysis : Two Sessions (pre-post) with an additional covariate (2 messages)
Second level FE error (4 messages)
second level feat error - missing tsplot (3 messages)
Segmentation; Partition variation in class (4 messages)
segmented standard brain? (6 messages)
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SEM (9 messages)
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sequence (1 message)
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short event duration and FLOBS (6 messages)
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Siemens Allegra MDDW6/12 (1 message)
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siena coregistration (4 messages)
siena edge detection and brain mask (5 messages)
siena flowmaps integral value (2 messages)
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single subject analysis (7 messages)
single-group average not working (5 messages)
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skip initial volumes... (2 messages)
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slice timing correction and stimulus timing (3 messages)
slice timing? (1 message)
small SIENA changes (1 message)
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smoothness estimates (2 messages)
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some basic questions concerning DTI bedpost (2 messages)
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Spatial Normalization of MELODIC IC_MAPS / multi subject comparisons of activation maps (3 messages)
spatially normalize using three matrices (3 messages)
Specifying analysis ROI mask image for Melodic (3 messages)
SPM5 Segm with (FSL) NiFTI custom TPMs fails; hdr+img pair works (1 message)
Standard Mask Issue with Sienax (2 messages)
Standard space color map in FSLview (4 messages)
starting GUI fails (6 messages)
std2imgcoord (3 messages)
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strange level 3 results (2 messages)
structural MRI job opportunity (1 message)
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Susan Error:Program not compiled for this data type (7 messages)
syntax error in expression "0 + ": premature end of expression (7 messages)
target image for tbss (2 messages)
target image prechosen in tbss_2_reg (2 messages)
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tbss in parallel (3 messages)
tbss issue with cluster stat maps (7 messages)
TBSS on Debian+AMD64 (4 messages)
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tbss output (2 messages)
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TBSS statistics (Randomise) - buglet fixed and available from FSL download site (1 message)
TBSS vis-a-vis variable slice #s. (2 messages)
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tbss/64-bit IRTK binaries (4 messages)
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TBSS: tbss_non_FA segmentation fault (6 messages)
tbss_2_reg (2 messages)
tbss_3_postreg (7 messages)
tbss_4_prestats and 32-bit memory (2 messages)
tbss_4_prestats and GLIBC version issues (2 messages)
tbss_4_prestats crashes (2 messages)
tbss_non_FA (2 messages)
temporal and spatial filters in FEAT (2 messages)
temporal derivatives and analysis in sparse designs (5 messages)
tensor-PICA method (1 message)
Textfile-format for bvecs and bvals -hint in the webmanual possible? (2 messages)
thalamic segmentation atlas (2 messages)
Third level FDR (2 messages)
Three installation problems (2 messages)
Three Level Analysis (4 messages)
Threshold problem in TBSS data (2 messages)
Thresholding in featquery (3 messages)
time missing from normalised functional data set (2 messages)
triple t-test and paired group (2 messages)
trouble changing the orientation when converting from analyze to nifti (2 messages)
troubleshooting second level feat error (1 message)
Troulbe Installing FSL (3 messages)
Troulbe Installing FSL - Solution Found (3 messages)
tsplot (3 messages)
Tstat image, Zstat image (3 messages)
ttest2 in tbss (5 messages)
Two groups with a covariate design matrix question (5 messages)
two session- two condition second level analysis (2 messages)
ubuntu build (3 messages)
UINT16 (4 messages)
Unable to compile FSLView (2 messages)
uncontroversial thresholds for fixed-effects design, highpass cutoff, and more (9 messages)
understanding COPE/PERCENT (2 messages)
Understanding design.mat, PEs and res4d (5 messages)
units Eigenvalue in dtifit (3 messages)
Unsubscribe (1 message)
unsuscribe (2 messages)
upgrade problem opening FEAT (5 messages)
using "randomise" (2 messages)
Using Multiple Processors (3 messages)
using the cluster tool on randomise output (4 messages)
valid bvecs and bvals (2 messages)
validity of design (3 messages)
variance smoothing with randomise and FA data (2 messages)
VBM processing with FSL (SIENAX)... (2 messages)
VBM using Siena (1 message)
Vector analysis (2 messages)
ventricular mask (2 messages)
verify Dtifit on Phillips Scanner (3 messages)
Very slow FEAT GUI execution (7 messages)
Visualization of Atrophy (4 messages)
Voxel thresholding and result table (6 messages)
voxel-wise correction on masked dataset (9 messages)
voxelwise (1 message)
Voxelwise SIENA Statistics (1 message)
VSCALING in SIENAX (1 message)
VSCALING in SIENAX revised (2 messages)
Warning (2 messages)
warning nifti_read_buffer (../mask.img) (2 messages)
Warning: Standard image not valid (3 messages)
warping of V1 (2 messages)
waypoint and FSLview (1 message)
waypoints and FSLview (1 message)
Windows Xp Bash Error (1 message)
Windows XP FSL error (2 messages)
x voxel index and x millimetre coordinate (1 message)
Yet another orientation question (30 messages)
z coordinates on FEAT report page (2 messages)
z-min with FEATQUERY (2 messages)
[Freesurfer] scalp surfaces - mri_watershed vs betsurf (fwd) (1 message)
[Fwd: [FSL] NeuroSlice brain model] (1 message)
[SPM] how to interpretate the L-R of the results (1 message)

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