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> When doing a 12 parameter normalization, I get confused about the
> parameters.
> 
> Clearly, the first 6 parameters are translations and rotations.
> 
> The last 6 are variously referred to as "scaling" or "zooms" or
> "affine", depending on where you encounter them in the code or
> documentation.
> 
> When a brain is linearly strectched to match a template, is that a zoom
> or scaling or affine process?

Zoom, scale and stretching all pretty much refer to the same thing. Parameters
7, 8 and 9 refer to zooms in the x, y and z directions respectively:

     ____      __________
    |    | -> |          |
    |    |    |          |
     ----      ----------

               ____
     ____     |    |
    |    | -> |    |
    |    |    |    |
     ----      ----

The affine part is sometimes referred to as shearing, and looks something like:
     ____      _____
    |    | -> /    /
    |    |   /    /
     ----    ----

Regards.
-John


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