Hi,

Have you tried GESAMT? See https://www.ccp4.ac.uk/html/gesamt.html#command-line-options

All the best,

Irwin

From: CCP4 bulletin board <[log in to unmask]> on behalf of Manoj N <[log in to unmask]>
Sent: Thursday, March 2, 2023 7:45 AM
To: [log in to unmask] <[log in to unmask]>
Subject: [ccp4bb] Tools for structure-based multiple sequence alignment
 

Dear all,

                We want to generate a structure-based multiple sequence alignment for a large number of homologous structures (>100).


What are the available programs (stand-alone or webserver) to do this?


Thank you,

Best wishes,

Manoj



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