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Hi Eleanor, Hi All,

As suggested by Andrew (thanks!), I've switched off the NCS in Phaser and this gave a solution in C2 (a=66.2 b=83.9  c=66.2   90  98.7  90) that refines much better than the others (R=0.32/0.39).

Still, I am not 100% convinced this is the correct cell/spacegroup... but it's a good starting point to continue the investigation.

Thanks to all for your help !

GIA




Le 22/03/2023 à 07:10, Eleanor Dodson a écrit :
[log in to unmask]">
You have tried all spacegroups within point groups? P2 p21 c222 c2221?. 

On Wed, 22 Mar 2023 at 03:01, Lijun Liu <[log in to unmask]> wrote:
If data processing to be ok and all possible monoclinic and orthorombic SG gave unreasonable high Rs, maybe good to give a try with p1 space group?  Since the p-lattice indexing gave same a and  b also very close alpha and beta, it could not exclude the possibility of p1 then twinned (also together with ncs and tNCS) to show higher symmetry? 

Sent from my iPhone

On Mar 21, 2023, at 1:25 PM, Jessica Bruhn <[log in to unmask]> wrote:


Hi Gianluca,

Have you checked for diffraction anisotropy problems? It might be worth running it through the STARANISO webserver: https://staraniso.globalphasing.org/cgi-bin/staraniso.cgi. Anisotropy can make your data look twinned and elliptical truncation can help improve maps. 

Good luck!

Best,
Jessica

On Tue, Mar 21, 2023 at 11:17 AM Jon Cooper <[log in to unmask]> wrote:
Hello, can you give us a screenshot of a diffraction image, with the caveat that they never look all that good with fine-slicing, still it might help ;-0 Also, an idea of the R-merge, R-meas, CC-half in some of those space groups.

Best wishes, Jon Cooper. [log in to unmask]

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-------- Original Message --------
On 21 Mar 2023, 16:43, Gianluca Cioci < [log in to unmask]> wrote:

Dear All,

I have collected a dataset from a small protein diffracting at 2.7A resolution, here is the space-group determination from XDS:

 *  44        aP          0.0      66.3   66.3   83.9  90.2  90.1  98.7
 *  31        aP          1.2      66.3   66.3   83.9  89.8  90.1  81.3
 *  14        mC         1.3      86.4  100.6   83.9  90.0  90.2  90.0
 *  34        mP         2.9      66.3   83.9   66.3  90.2  98.7  90.1
 *  13        oC          3.7      86.4  100.6   83.9  90.0  90.2  90.0
 *  10        mC         4.9     100.6   86.4   83.9  89.8  90.0  90.0

Clearly, something weird is going on...

The structure can be solved in C2/P21/C2221 with different number of molecules in the AU, with Phaser complaining about strong tNCS modulation.

However the maps look bad and the structure is impossible to refine (Rfact > 0.5) in all the space-groups that I have tried so far...

Thanks in advance for any advice on how to rescue these data !

Cheers,

GIA


Click to zoom the image


--
Dr. Gianluca CIOCI
Toulouse Biotechnology Institute (TBI)
http://www.toulouse-biotechnology-institute.fr/en/research/enzyme-molecular-engineering-and-catalysis/cimes.html
PICT - Plateforme Intégrée de Criblage de Toulouse
http://www.pict.ipbs.fr/

Tel: +33 (0)5 61 55 97 68
E-mail: [log in to unmask]

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-- 
Dr. Gianluca CIOCI
Toulouse Biotechnology Institute (TBI)
http://www.toulouse-biotechnology-institute.fr/en/research/enzyme-molecular-engineering-and-catalysis/cimes.html
PICT - Plateforme Intégrée de Criblage de Toulouse
http://www.pict.ipbs.fr/

Tel: +33 (0)5 61 55 97 68
E-mail: [log in to unmask]

TBI - INSA Toulouse
135 avenue de Rangueil
31077 Toulouse CEDEX 04
http://www.toulouse-biotechnology-institute.fr


To unsubscribe from the CCP4BB list, click the following link:
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