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Dear Matthew, Thank you so much for your reply. Can I ask for a link for installing the “dc” program? I am not sure my cluster administrator knows what a “dc” program. Jingyi On Sun, Aug 14, 2022 at 1:05 PM Matthew Webster < [log in to unmask]> wrote: > Hello Jingyi, > It looks like the “dc” program is not present on your cluster - this is a > extremely common unix utility, so I would contact your cluster > administrator to ask if it can be installed. > > Kind Regards > Matthew > -------------------------------- > Dr Matthew Webster > FMRIB Centre > John Radcliffe Hospital > University of Oxford > > On 12 Aug 2022, at 23:47, Jingyi Wang <[log in to unmask]> wrote: > > Hello fsl experts, > > I am having trouble with bet command. I am using the unix system on > cluster. When I run bet without options it is working fine. But if I have > bet with options an error message pops out. > > This is my command (I already set the environment varible for fsl). > bet $rest_dir/$anat.nii.gz $rest_dir/T1High_brain -R -f 0.4 -g -0.3 > > This is the error message > /sw/fsl/bin/bet: line 265: dc: command not found > /sw/fsl/bin/bet failed during > command:/28andMe_process/results/01/trial/T1High.nii.gz > /JacobLabData/28andMe_process/results/01/trial/T1High_brain -R -f 0.4 -g > -0.3 > > If I use bet $rest_dir/$anat.nii.gz $rest_dir/T1High_brain, no error > message. > > > Any insights could help. Thanks in advance. > > Jingyi > > ######################################################################## > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=FSL&A=1 > > This message was issued to members of www.jiscmail.ac.uk/FSL, a mailing > list hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ > > > > ------------------------------ > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=FSL&A=1 > ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=FSL&A=1 This message was issued to members of www.jiscmail.ac.uk/FSL, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/