Print

Print


Hi Paul and co., 

I'm having some repeated errors with my dual_regression call - running this locally (Mac, OS Monterey, the newest FSL version, etc.).
I have verified (a) I'm using the correct syntax given the flag this has changed in (one of) the new version(s) and I've also debugged file paths to ensure the files exist, which was one source of error as it did initially not like the /N47_gICA. If I've missed something trivial do let me know.

## MAIN COMMAND
dual_regression N47_gICA/term/IC30/melodic_IC.nii.gz 1 N47_gICA/term/IC30/design_test.mat N47_gICA/term/IC30/design_test.con 500 N47_gICA/term/IC30/DRG/pma_ga_motionEffects `cat N47_gICA/termBabies37.txt`

## TERMINAL OUTPUT 
mkdir: N47_gICA/term/IC30/DRG/pma_ga_motionEffects: File exists
mkdir: N47_gICA/term/IC30/DRG/pma_ga_motionEffects/scripts+logs: File exists
creating common mask
doing the dual regressions
sorting maps and running randomise
Error submitting job - Errors occured when running array task in shell plugin: Task 1 failed executing: /bin/zsh -c /usr/local/fsl/bin/fslmerge -t N47_gICA/term/IC30/DRG/pma_ga_motionEffects/dr_stage2_ic0000 `$FSLDIR/bin/imglob N47_gICA/term/IC30/DRG/pma_ga_motionEffects/dr_stage2_subject*_ic0000.*` ;         /usr/local/fsl/bin/imrm `$FSLDIR/bin/imglob N47_gICA/term/IC30/DRG/pma_ga_motionEffects/dr_stage2_subject*_ic0000.*` ; /usr/local/fsl/bin/randomise -i N47_gICA/term/IC30/DRG/pma_ga_motionEffects/dr_stage2_ic0000 -o N47_gICA/term/IC30/DRG/pma_ga_motionEffects/dr_stage3_ic0000 -m N47_gICA/term/IC30/DRG/pma_ga_motionEffects/mask -d N47_gICA/term/IC30/design_test.mat -t N47_gICA/term/IC30/design_test.con -n 500 -T -V (ERROR: Program failed, unknown exception

Exiting
)
Task 2 failed executing: /bin/zsh -c /usr/local/fsl/bin/fslmerge -t N47_gICA/term/IC30/DRG/pma_ga_motionEffects/dr_stage2_ic0001 `$FSLDIR/bin/imglob N47_gICA/term/IC30/DRG/pma_ga_motionEffects/dr_stage2_subject*_ic0001.*` ;         /usr/local/fsl/bin/imrm `$FSLDIR/bin/imglob N47_gICA/term/IC30/DRG/pma_ga_motionEffects/dr_stage2_subject*_ic0001.*` ; /usr/local/fsl/bin/randomise -i N47_gICA/term/IC30/DRG/pma_ga_motionEffects/dr_stage2_ic0001 -o N47_gICA/term/IC30/DRG/pma_ga_motionEffects/dr_stage3_ic0001 -m N47_gICA/term/IC30/DRG/pma_ga_motionEffects/mask -d N47_gICA/term/IC30/design_test.mat -t N47_gICA/term/IC30/design_test.con -n 500 -T -V (ERROR: Program failed, unknown exception

# and so on, with more task fails 

########################################################################

To unsubscribe from the FSL list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=FSL&A=1

This message was issued to members of www.jiscmail.ac.uk/FSL, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/