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On 24 Aug 2022, at 10:11, Ashwati Vipin <[log in to unmask]> wrote:
Hello,
I have collected 3D and 2D PASL data from a Siemens Prisma scanner and have been trying to process the images using BASIL. While the T1 processing goes without any hitch, the ASL processing just doesn’t seem to go through and I’m getting blank values for all perfusion measures. I have attached the screenshots of the BASIL GUI, the scanning protocol of the ASL and the PD-weighted image I supplied as a calibration image and also the log files.
I have run the analyses with 2D PASL data as well (runlog.txt attached) but am running into the same errors as for 3D PASL. Please help me understand where I’m going wrong. I’ve used BASIL before using pcASL data with no issues so I’m wondering whether the images are problematic or if some parameters need to be tweaked?
Thank you so much for your help.
Best,
Ashwati
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<BIOC_Protocol_M0updated_3DPASL_PD.pdf><logfile_calib><M0.nii.gz>1208.69000000000000000000
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<logfile>{\rtf1\ansi\ansicpg1252\cocoartf2638
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\paperw11900\paperh16840\margl1440\margr1440\vieww11520\viewh8400\viewkind0
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\f0\fs24 \cf0 /usr/local/fsl/bin/oxford_asl -i /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/Subjects/BIOC_0001_v01/ASL2D/BIOC_0001_v01_ASL2D.nii --iaf diff --ibf rpt --bolus 0.7 --rpts 91 --slicedt 0.0425 --tis 1.8 --fslanat /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/struc.anat -o /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL --bat 0 --t1 1.65 --t1b 1.65 --alpha 0.98 --spatial --fixbolus --artoff --exch spa --disp sgauss\
oxford_asl -i /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/Subjects/BIOC_0001_v01/ASL2D/BIOC_0001_v01_ASL2D.nii --iaf diff --ibf rpt --bolus 0.7 --rpts 91 --slicedt 0.0425 --tis 1.8 --fslanat /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/struc.anat -o /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL --bat 0 --t1 1.65 --t1b 1.65 --alpha 0.98 --spatial --fixbolus --artoff --exch spa --disp sgauss\
OXFORD_ASL - running\
Version: v4.0.27-dirty Tue Jul 13 10:09:25 2021\
Input file: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/Subjects/BIOC_0001_v01/ASL2D/BIOC_0001_v01_ASL2D.nii\
Pre-processing\
Using structural images (bias corrected) from fsl_anat: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/struc.anat\
Standard brain is: /usr/local/fsl/data/standard/MNI152_T1_2mm\
Structural to standard transformation warp: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/struc.anat/T1_to_MNI_nonlin_coeff.nii.gz\
Number of TIs in list: 1\
TIs list: --ti1=1.8\
Input ASL format is: diff\
Input block format is: rpt\
Number of voxels is:40960\
Number of repeats in data is:91\
Outputting ASL data mean at each TI\
Done.\
Label-control difference data provided: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/Subjects/BIOC_0001_v01/ASL2D/BIOC_0001_v01_ASL2D.nii\
Number of inversion times: 1\
Number of timepoints in data: 91\
Number of repeats in data: 91\
Operating in Single TI mode\
1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8 1.8\
1.8\
Using FSL_ANAT outputs at: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/struc.anat\
Bias field extracted from /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/struc.anat sucessfully\
Defaulting brain extracted mean ASL image as initial registration reference\
Using brain extracted mean ASL image as initial registration reference\
Creating WMseg for BBR registration\
Performing registration\
Using /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/meanasl_brain as base for inital registration\
Initial registration is FLIRT only\
Performing registration\
ASL_REG\
Input file is: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/meanasl_brain\
Registration MAIN stage (FLIRT)\
Tidying up\
ASL_REG - Done.\
Could not find a supported file with prefix "/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/tmp_asl_reg/lowtohigh"\
Creating mask\
Generating dilated mask for initial BASIL runs\
T1: 1.65\
T1b: 1.65\
Bolus duration: 0.7\
Setting up BASIL\
pASL model\
Slice timing correction with delta: 0.0425\
Fixed bolus duration\
Variable arterial arrival time\
Setting prior/initial (tissue/gray matter) bolus arrival time to 0\
Instructing BASIL to use automated spatial smoothing\
Using exchange model: spa\
Using dispersion model: sgauss\
BASIL options (/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil_options.txt):\
----\
#FABBER options created by Oxford_asl --t1=1.65 --t1b=1.65 --tau=0.7 --slicedt=0.0425 --bat=0 --save-model-fit\
----\
Calling BASIL on data - conventional perusion image\
Initial run of BASIL on data where we have avareged all repeats at each TI\
Run time basil options:\
--spatial --exch=spa --disp=sgauss\
---\
Creating output directory: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil\
STEP 1: VB - Tissue\
----------------------\
Welcome to FABBER v4.0.10-dirty\
----------------------\
Last commit: Wed May 19 11:36:18 2021\
Logfile started: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step1/logfile\
0%NEWMAT exception caught in fabber:\
Internal error in Fabber: LinearizedFwdModel::ReCentre: Non-finite values found in offset\
\
Final logfile: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step1/logfile\
Could not find a supported file with prefix "/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step1/finalMVN"\
STEP 2: VB - Tissue dispersion exchange - init with STEP 1\
----------------------\
Welcome to FABBER v4.0.10-dirty\
----------------------\
Last commit: Wed May 19 11:36:18 2021\
Logfile started: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step2/logfile\
0%NEWMAT exception caught in fabber:\
Internal error in Fabber: LinearizedFwdModel::ReCentre: Non-finite values found in offset\
\
Final logfile: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step2/logfile\
Could not find a supported file with prefix "/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step2/finalMVN"\
STEP 3: Spatial VB Tissue dispersion exchange - init with STEP 2\
----------------------\
Welcome to FABBER v4.0.10-dirty\
----------------------\
Last commit: Wed May 19 11:36:18 2021\
Logfile started: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/logfile\
0%NEWMAT exception caught in fabber:\
Internal error in Fabber: LinearizedFwdModel::ReCentre: Non-finite values found in offset\
\
Final logfile: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/logfile\
Could not find a supported file with prefix "/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/finalMVN"\
End.\
Using BASIL step /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/mean_ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/mean_ftiss\
/usr/local/fsl/bin/oxford_asl: line 525: 29737 Abort trap: 6 fslmaths $\{finalstep\}/mean_ftiss -thr 0 $2/ftiss\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/mean_delttiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/mean_delttiss\
/usr/local/fsl/bin/oxford_asl: line 525: 29738 Abort trap: 6 fslmaths $\{finalstep\}/mean_delttiss -thr 0 $2/delttiss\
Fabber variance calculator\
Working in /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3\
Calculating variance for: ftiss\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=64, y=64, z=10, vols=1\
FabberRunDataNewimage::Voxel size: x=4mm, y=4mm, z=10.0006mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/finalMVN (File is invalid or does not exist)\
Calculating variance for: delttiss\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=64, y=64, z=10, vols=1\
FabberRunDataNewimage::Voxel size: x=4mm, y=4mm, z=10.0006mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/finalMVN (File is invalid or does not exist)\
Calculating variance for: disp1\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=64, y=64, z=10, vols=1\
FabberRunDataNewimage::Voxel size: x=4mm, y=4mm, z=10.0006mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/finalMVN (File is invalid or does not exist)\
Calculating variance for: exch1\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=64, y=64, z=10, vols=1\
FabberRunDataNewimage::Voxel size: x=4mm, y=4mm, z=10.0006mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/finalMVN (File is invalid or does not exist)\
Calculating variance for: exch2\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=64, y=64, z=10, vols=1\
FabberRunDataNewimage::Voxel size: x=4mm, y=4mm, z=10.0006mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/finalMVN (File is invalid or does not exist)\
Calculating variance for: exch3\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=64, y=64, z=10, vols=1\
FabberRunDataNewimage::Voxel size: x=4mm, y=4mm, z=10.0006mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/finalMVN (File is invalid or does not exist)\
Done.\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/var_ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/var_ftiss\
/usr/local/fsl/bin/oxford_asl: line 525: 29765 Abort trap: 6 fslmaths $\{finalstep\}/var_ftiss -bin -add 1 -uthr 1 -mul 1e12 -add $\{finalstep\}/var_ftiss $2/var_ftiss\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/var_delttiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/var_delttiss\
/usr/local/fsl/bin/oxford_asl: line 525: 29766 Abort trap: 6 fslmaths $\{finalstep\}/var_delttiss -bin -add 1 -uthr 1 -mul 1e12 -add $\{finalstep\}/var_delttiss $2/var_delttiss\
Could not find a supported file with prefix "/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/basil/step3/finalMVN"\
Main run of BASIL on ASL data\
Run time basil options:\
--spatial --exch=spa --disp=sgauss\
---\
Initial MVN for BASIL is: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/finalMVN\
Creating output directory: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil\
Could not find a supported file with prefix "/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/init/finalMVN"\
STEP 1: VB - Tissue - init with STEP 0\
----------------------\
Welcome to FABBER v4.0.10-dirty\
----------------------\
Last commit: Wed May 19 11:36:18 2021\
Logfile started: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step1/logfile\
0%NEWMAT exception caught in fabber:\
Internal error in Fabber: LinearizedFwdModel::ReCentre: Non-finite values found in offset\
\
Final logfile: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step1/logfile\
Could not find a supported file with prefix "/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step1/finalMVN"\
STEP 2: VB - Tissue dispersion exchange - init with STEP 1\
----------------------\
Welcome to FABBER v4.0.10-dirty\
----------------------\
Last commit: Wed May 19 11:36:18 2021\
Logfile started: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step2/logfile\
0%NEWMAT exception caught in fabber:\
Internal error in Fabber: LinearizedFwdModel::ReCentre: Non-finite values found in offset\
\
Final logfile: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step2/logfile\
Could not find a supported file with prefix "/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step2/finalMVN"\
STEP 3: Spatial VB Tissue dispersion exchange - init with STEP 2\
----------------------\
Welcome to FABBER v4.0.10-dirty\
----------------------\
Last commit: Wed May 19 11:36:18 2021\
Logfile started: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/logfile\
0%NEWMAT exception caught in fabber:\
Internal error in Fabber: LinearizedFwdModel::ReCentre: Non-finite values found in offset\
\
Final logfile: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/logfile\
Could not find a supported file with prefix "/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/finalMVN"\
End.\
Using BASIL step /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/mean_ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/mean_ftiss\
/usr/local/fsl/bin/oxford_asl: line 525: 29861 Abort trap: 6 fslmaths $\{finalstep\}/mean_ftiss -thr 0 $2/ftiss\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/mean_delttiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/mean_delttiss\
/usr/local/fsl/bin/oxford_asl: line 525: 29862 Abort trap: 6 fslmaths $\{finalstep\}/mean_delttiss -thr 0 $2/delttiss\
Fabber variance calculator\
Working in /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3\
Calculating variance for: ftiss\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=64, y=64, z=10, vols=1\
FabberRunDataNewimage::Voxel size: x=4mm, y=4mm, z=10.0006mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/finalMVN (File is invalid or does not exist)\
Calculating variance for: delttiss\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=64, y=64, z=10, vols=1\
FabberRunDataNewimage::Voxel size: x=4mm, y=4mm, z=10.0006mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/finalMVN (File is invalid or does not exist)\
Calculating variance for: disp1\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=64, y=64, z=10, vols=1\
FabberRunDataNewimage::Voxel size: x=4mm, y=4mm, z=10.0006mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/finalMVN (File is invalid or does not exist)\
Calculating variance for: exch1\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=64, y=64, z=10, vols=1\
FabberRunDataNewimage::Voxel size: x=4mm, y=4mm, z=10.0006mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/finalMVN (File is invalid or does not exist)\
Calculating variance for: exch2\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=64, y=64, z=10, vols=1\
FabberRunDataNewimage::Voxel size: x=4mm, y=4mm, z=10.0006mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/finalMVN (File is invalid or does not exist)\
Calculating variance for: exch3\
FABBER: MVNtool\
FabberRunDataNewimage::Loading mask data from '/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/mask_dil'\
FabberRunDataNewimage::Dimensions: x=64, y=64, z=10, vols=1\
FabberRunDataNewimage::Voxel size: x=4mm, y=4mm, z=10.0006mm, TR=1 sec\
FabberRunDataNewimage::Intents: 0, 0, 0, 0\
FabberRunDataNewimage::Setting coordinates from extent\
Voxel data not found: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/finalMVN (File is invalid or does not exist)\
Done.\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/var_ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/var_ftiss\
/usr/local/fsl/bin/oxford_asl: line 525: 29889 Abort trap: 6 fslmaths $\{finalstep\}/var_ftiss -bin -add 1 -uthr 1 -mul 1e12 -add $\{finalstep\}/var_ftiss $2/var_ftiss\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/var_delttiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/var_delttiss\
/usr/local/fsl/bin/oxford_asl: line 525: 29890 Abort trap: 6 fslmaths $\{finalstep\}/var_delttiss -bin -add 1 -uthr 1 -mul 1e12 -add $\{finalstep\}/var_delttiss $2/var_delttiss\
Could not find a supported file with prefix "/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/basil/step3/finalMVN"\
Performing final registration\
Performing registration\
ASL_REG\
Input file is: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/ftiss\
Registration FINAL stage (BBR)\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/ftiss\
/usr/local/fsl/bin/asl_reg: line 385: 29924 Abort trap: 6 fslmaths $infile -mas $mask $tempdir/asldata_brain\
'/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/mask.nii.gz' and '/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/mask.nii.gz' are the same file\
Running BBR\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_kxtm3ia__asl_reg/asldata_brain\
Image Exception : #22 :: Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_kxtm3ia__asl_reg/asldata_brain\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_kxtm3ia__asl_reg/asldata_brain\
Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_kxtm3ia__asl_reg/asldata_brain\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_kxtm3ia__asl_reg/asldata_brain\
Could not open matrix file /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_kxtm3ia__asl_reg/low2high_final.mat\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_kxtm3ia__asl_reg/asldata_brain\
Image Exception : #22 :: Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_kxtm3ia__asl_reg/asldata_brain\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_kxtm3ia__asl_reg/asldata_brain\
libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_kxtm3ia__asl_reg/asldata_brain\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_kxtm3ia__asl_reg/asldata_brain\
/usr/local/fsl/bin/epi_reg: line 390: 30150 Abort trap: 6 $FSLDIR/bin/applywarp -i $\{vepi\} -r $\{vrefhead\} -o $\{vout\} --premat=$\{vout\}.mat --interp=spline\
BBR end\
Saving FINAL output\
cp: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_kxtm3ia__asl_reg/low2high_final.mat: No such file or directory\
Could not find a supported file with prefix "/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_kxtm3ia__asl_reg/low2high_final"\
'/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/tissseg.nii.gz' and '/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl/tissseg.nii.gz' are the same file\
Tidying up\
ASL_REG - Done.\
Generating analysis mask from final structural registration\
Using user-supplied structural->standard space warp to generate cortical GM/WM masks\
T1t (for calibration): 1.3\
Could not find a supported file with prefix "/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///ftiss"\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///ftiss\
Image Exception : #22 :: Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///ftiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///ftiss\
Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///ftiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///ftiss\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///ftiss\
Image Exception : #22 :: Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///ftiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///ftiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///ftiss\
/usr/local/fsl/bin/oxford_asl: line 265: 30376 Abort trap: 6 applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
Image Exception : #63 :: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Image Exception : #22 :: Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Mean perfusion in gm is\
Image Exception : #63 :: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Image Exception : #22 :: Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Mean perfusion in cortical gm is\
Image Exception : #63 :: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/std_space///perfusion\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/std_space///perfusion\
/usr/local/fsl/bin/oxford_asl: line 347: 30380 Abort trap: 6 fslmaths $outdir/std_space/$subdir/$parname -div $normval $outdir/std_space/$subdir/$\{parname\}_norm\
Image Exception : #63 :: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
/usr/local/fsl/bin/oxford_asl: line 347: 30381 Abort trap: 6 fslmaths $outdir/native_space/$subdir/$parname -div $normval $outdir/native_space/$subdir/$\{parname\}_norm\
Image Exception : #63 :: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/struct_space///perfusion\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/struct_space///perfusion\
/usr/local/fsl/bin/oxford_asl: line 347: 30382 Abort trap: 6 fslmaths $outdir/struct_space/$subdir/$parname -div $normval $outdir/struct_space/$subdir/$\{parname\}_norm\
Could not find a supported file with prefix "/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///delttiss"\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///delttiss\
Image Exception : #22 :: Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///delttiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///delttiss\
Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///delttiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///delttiss\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///delttiss\
Image Exception : #22 :: Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///delttiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///delttiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///delttiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///delttiss\
/usr/local/fsl/bin/oxford_asl: line 265: 30387 Abort trap: 6 applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
Image Exception : #63 :: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Image Exception : #22 :: Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Mean arrival in gm is\
Image Exception : #63 :: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Image Exception : #22 :: Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Mean arrival in cortical gm is\
Image Exception : #63 :: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Image Exception : #22 :: Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Mean perfusion in wm is\
Image Exception : #63 :: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Image Exception : #22 :: Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion\
Mean perfusion in cerebral wm is\
Image Exception : #63 :: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Image Exception : #22 :: Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Mean arrival in wm is\
Image Exception : #63 :: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Image Exception : #22 :: Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Failed to read volume /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Error : No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///arrival\
Mean arrival in cerebral wm is\
Could not find a supported file with prefix "/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_ftiss"\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_ftiss\
Image Exception : #22 :: Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_ftiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_ftiss\
Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_ftiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_ftiss\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_ftiss\
Image Exception : #22 :: Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_ftiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_ftiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_ftiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_ftiss\
/usr/local/fsl/bin/oxford_asl: line 265: 30398 Abort trap: 6 applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
(standard_in) 1: parse error\
Image Exception : #63 :: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/std_space///perfusion_var\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/std_space///perfusion_var\
/usr/local/fsl/bin/oxford_asl: line 371: 30403 Abort trap: 6 fslmaths $outdir/std_space/$subdir/$\{parname\}_var -div $normval $outdir/std_space/$subdir/$\{parname\}_var_norm\
Image Exception : #63 :: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion_var\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/native_space///perfusion_var\
/usr/local/fsl/bin/oxford_asl: line 371: 30404 Abort trap: 6 fslmaths $outdir/native_space/$subdir/$\{parname\}_var -div $normval $outdir/native_space/$subdir/$\{parname\}_var_norm\
Image Exception : #63 :: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/struct_space///perfusion_var\
libc++abi: terminating with uncaught exception of type std::runtime_error: No image files match: /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/struct_space///perfusion_var\
/usr/local/fsl/bin/oxford_asl: line 371: 30405 Abort trap: 6 fslmaths $outdir/struct_space/$subdir/$\{parname\}_var -div $normval $outdir/struct_space/$subdir/$\{parname\}_var_norm\
Could not find a supported file with prefix "/var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_delttiss"\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_delttiss\
Image Exception : #22 :: Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_delttiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_delttiss\
Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_delttiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_delttiss\
Image Exception : #63 :: No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_delttiss\
Image Exception : #22 :: Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_delttiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_delttiss\
libc++abi: terminating with uncaught exception of type std::runtime_error: Failed to read volume /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_delttiss\
Error : No image files match: /var/folders/tr/gswxqbyn599dt844wcrzrtfm0000gn/T/fsl_twzey7ta_ox_asl///var_delttiss\
/usr/local/fsl/bin/oxford_asl: line 265: 30410 Abort trap: 6 applywarp --in=$tempdir/$subdir/$param --out=$outdir/std_space/$subdir/$parname --ref=$std --premat=$tempdir/asl2struct.mat --warp=$warp $APPLYWARP_OPTS\
Output is /Volumes/DRCS_MAIN_SERVER/DRCS/BIOCIS/Neuroimaging/ASL_Test/2DASL/\
OXFORD_ASL - done.\
\
Return code: 0\
\
}
########################################################################
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