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Hi James, Thank you for pointing out this problem! I have removed the / and moved the run_data.star to my current directory. However, the problem still exists. Hongcheng Fan | | 范宏成 | | [log in to unmask] | 签名由网易邮箱大师定制 On 6/13/2022 23:35，JAMES MICHAEL S1JJRUdFUiA=<[log in to unmask]> wrote： Hi Hongcheng, You made a mistake in the command. There is a / before WarpXML, which means it is looking for that file at the top of your file system. If you take away the / then probably everything will work. I'm not sure about the last part after -p though. Best wishes James fanhongcheng17 <[log in to unmask]> escribió: Hi all, I wanted to convert the refinement of M to relion4 tomo processing. I see this GitHub - joton/reliontomotools: Complementary tools for Relion tomo command can do it. However, I got problems using the reliontomotools (see the attachment). Is my command not right? Any suggestions? Thank you! Hongcheng Fan | | 范宏成 | | [log in to unmask] | 签名由网易邮箱大师定制 ######################################################################## To unsubscribe from the CCPEM list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCPEM&A=1 This message was issued to members of www.jiscmail.ac.uk/CCPEM, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/ ######################################################################## To unsubscribe from the CCPEM list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCPEM&A=1 This message was issued to members of www.jiscmail.ac.uk/CCPEM, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/