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Dear Huiling, > Hello，when I tried to run the following command: > > eddy_openmp --imain=data --mask=my_hifi_b0_brain_mask --acqp=acqparams.txt --index=index.txt --bvecs=bvecs --bvals=bvals --topup=my_topup_results --niter=8 --fwhm=10,8,4,2,0,0,0,0 --repol --cnr_maps --out=eddy_corrected_data --mporder=6 --slspec=my_slspec.txt --s2v_niter=5 --s2v_lambda=1 --s2v_interp=trilinear > > Then, the prompt "EddyInputError: Slice-to-vol is not yet implemented for the CPU version" appeared. > > My CPU version is "8 Intel(R) Xeon(R) CPU E5-2620 v4 @ 2.10GHz" > > So, would you like to tell me how to solve this problem? Change a computer? well, yes. The slice-to-volume was initially only implemented for Nvidia GPUs. The reason for that was that I considered it to slow to run meaningfully on a CPU. This is still true, though I am currently working on a CPU version that I hope will be fast enough to be meaningfully useful. So your best bet is to find a Linux machine with an Nvidia GPU set up. They are becoming increasingly common, with people using them for deep learning. So I suspect it will not be impossible to find. But also be aware that it is really quite a small subset of diffusion data that benefit from it. It tends to be mainly babies/children that move sufficiently for slice-to-vol to make a difference. Jesper > > > Thanks! > > ######################################################################## > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=FSL&A=1 > > This message was issued to members of www.jiscmail.ac.uk/FSL, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/ ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=FSL&A=1 This message was issued to members of www.jiscmail.ac.uk/FSL, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/