No worries,
If you got things working, then you may not need to upload any images per Matthew’s request earlier (separate thread I guess). Feel free to upload problem images if you still encounter errors in
the future.
Cheers,
Taylor Hanayik PhD
Analysis Research Software Engineer
Wellcome Center for Integrative Neuroimaging (FMRIB)
University of Oxford
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Schedule a meeting:
https://calendly.com/taylorhanayik
From: FSL - FMRIB's Software Library <[log in to unmask]> on behalf of Suzanne <[log in to unmask]>
Reply to: FSL - FMRIB's Software Library <[log in to unmask]>
Date: Thursday, 4 June 2020 at 17:42
To: "[log in to unmask]" <[log in to unmask]>
Subject: Re: [FSL] fsl_glm writing out text file instead of nifti
Hi Taylor,
I figured out my problem. Silly really. I forgot that each functional run has a different number of time points (in my defense, I'm borrowing these data from another researcher), and I had basically been hard-coding the number of time
points in the design.fsf file based on run-01.
Now that I have edited my script to determine the number of time points for each functional run and enter that into the design.fsf, things are working.
Thanks for the offer of help, though.
cheers.
suzanne
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