Hi,
I am trying to use FSL in Freesurfer's dt_recon. However, it seems that my FSL package was never installed correctly. I get the same error in the initial installation and when I try to reinstall with fslpython_install.sh:
-----------------------
(base) melodys-mbp:~ melodyding$ sudo /usr/local/fsl/etc/fslconf/fslpython_install.sh -f $FSLDIR
Stage 1
By installing this python distribution you agree to the license terms in
/usr/local/fsl/fslpython/LICENSE.txt
100%
/usr/local/fsl/etc/fslconf/fslpython_install.sh: line 188: /usr/local/fsl/fslpython/bin/conda: No such file or directory
/usr/local/fsl/etc/fslconf/fslpython_install.sh: line 189: /usr/local/fsl/fslpython/bin/conda: No such file or directory
/usr/local/fsl/etc/fslconf/fslpython_install.sh: line 190: /usr/local/fsl/fslpython/bin/conda: No such file or directory
/usr/local/fsl/etc/fslconf/fslpython_install.sh: line 191: /usr/local/fsl/fslpython/bin/conda: No such file or directory
Stage 2
100%
Failed to create FSL Python environment - see /var/folders/mc/wg8nk7s52yn4rs1trxcf4w880000gn/T/fslpythonXXXX.ufEwp73k/fslpython_miniconda_installer.log for details
-----------------------
Inside the fslpython_miniconda_installer.log, I see the error:
-----------------------
Installing FSL conda distribution into /usr/local/fsl/fslpython
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
/usr/local/fsl/etc/fslconf/fslpython_install.sh: line 203: /usr/local/fsl/fslpython/bin/conda: No such file or directory
-----------------------
I'm on a Mac Mojave 10.14.8. Can you help with this problem?
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