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Today's topic summary
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- [SyneRBI/SIRF] added pass through of threshold for recon (#643) [4 Updates]
http://groups.google.com/group/ccp-petmr-codebot/t/e989506f3783356
- [SyneRBI/SIRF] added pass through of threshold for recon (#544) [2 Updates]
http://groups.google.com/group/ccp-petmr-codebot/t/2461bfa3e9d320b1
- [SyneRBI/SIRF] Gpu test (#642) [5 Updates]
http://groups.google.com/group/ccp-petmr-codebot/t/a063c86f8cb8e506
- [SyneRBI/SIRF-SuperBuild] ccache within CMake (#58) [2 Updates]
http://groups.google.com/group/ccp-petmr-codebot/t/b84bde745586e805
- [SyneRBI/SIRF-SuperBuild] update STIR to rel_4.0.0 (#377) [3 Updates]
http://groups.google.com/group/ccp-petmr-codebot/t/128cfbaf4d999ab0
- [SyneRBI/SIRF] Proper in-place algebra (#635) [5 Updates]
http://groups.google.com/group/ccp-petmr-codebot/t/8618bd3a11bcc83d
- [SyneRBI/SIRF] stir.make_Poisson_loglikelihood seems to ignore the model parameter (#567) [1 Update]
http://groups.google.com/group/ccp-petmr-codebot/t/15dbc889fe2de8e4
- [SyneRBI/SIRF] occasional Bad file descriptor in cGadgetron (#641) [2 Updates]
http://groups.google.com/group/ccp-petmr-codebot/t/d726d5bd72080897
- [SyneRBI/SIRF-SuperBuild] Current v2.1.0 build fails due to ITK (#380) [3 Updates]
http://groups.google.com/group/ccp-petmr-codebot/t/fb8e501bfc191f3e
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Topic: [SyneRBI/SIRF] added pass through of threshold for recon (#643)
URL: http://groups.google.com/group/ccp-petmr-codebot/t/e989506f3783356
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---------- 1 of 4 ----------
From: Alexander Whitehead <[log in to unmask]>
Date: Apr 27 12:17PM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1b3189d163406
a pass through for both the maximum and minimum relative change during osmaposl reconstruction has been added
It was easier and cleaner to abandon the old PR and re add the changes to a new branch
---------- 2 of 4 ----------
From: Alexander Whitehead <[log in to unmask]>
Date: Apr 27 12:24PM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1b37f8a180098
Sorry, I should have worked from SyneRBI/master not ALEXJAZZ008008/master
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From: Kris Thielemans <[log in to unmask]>
Date: Apr 27 02:18PM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1b9b6459fa47c
@KrisThielemans approved this pull request.
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From: Kris Thielemans <[log in to unmask]>
Date: Apr 27 02:20PM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1b9cbe8f462bd
looks good. let's wait for Travis before merging. squash merge I guess
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Topic: [SyneRBI/SIRF] added pass through of threshold for recon (#544)
URL: http://groups.google.com/group/ccp-petmr-codebot/t/2461bfa3e9d320b1
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---------- 1 of 2 ----------
From: Alexander Whitehead <[log in to unmask]>
Date: Apr 27 10:16AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1ac8455b719b4
@ALEXJAZZ008008 pushed 1 commit.
59bb7494b5ad0f76495f95100976ec04a332d21a Merge branch 'master' of https://github.com/SyneRBI/SIRF into passthrough_threshold_for_recon
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From: Alexander Whitehead <[log in to unmask]>
Date: Apr 27 12:15PM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1b2ffd2cb3793
Closed #544.
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https://github.com/SyneRBI/SIRF/pull/544#event-3277228019
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Topic: [SyneRBI/SIRF] Gpu test (#642)
URL: http://groups.google.com/group/ccp-petmr-codebot/t/a063c86f8cb8e506
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---------- 1 of 5 ----------
From: Richard Brown <[log in to unmask]>
Date: Apr 27 09:46AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1aae43ee185c5
You can view, comment on, or merge this pull request online at:
https://github.com/SyneRBI/SIRF/pull/642
-- Commit Summary --
* STIR NP test
* update test
* update test
---------- 2 of 5 ----------
From: Richard Brown <[log in to unmask]>
Date: Apr 27 09:48AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1aafb17eb26e0
@rijobro pushed 1 commit.
eb5fcdb8cb76f1d1daaa595ec5e6eec321507c41 niftypet test
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---------- 3 of 5 ----------
From: Richard Brown <[log in to unmask]>
Date: Apr 27 09:49AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1ab0a0f74717b
Merged #642 into master.
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---------- 4 of 5 ----------
From: Kris Thielemans <[log in to unmask]>
Date: Apr 27 09:56AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1ab6ea155eb13
@rijobro, can you rename this file to `NfityPET_test.sh` and provide a `README.md` with some information on when it's suitable?
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---------- 5 of 5 ----------
From: Richard Brown <[log in to unmask]>
Date: Apr 27 09:59AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1ab8de6d629f7
sure
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https://github.com/SyneRBI/SIRF/pull/642#issuecomment-620109765
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Topic: [SyneRBI/SIRF-SuperBuild] ccache within CMake (#58)
URL: http://groups.google.com/group/ccp-petmr-codebot/t/b84bde745586e805
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---------- 1 of 2 ----------
From: Kris Thielemans <[log in to unmask]>
Date: Apr 27 08:45AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1a785c068fe37
Closed #58.
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From: Kris Thielemans <[log in to unmask]>
Date: Apr 27 08:45AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1a785d2ce8dd3
Won't fix this as it seems up to the depend projects to take care of `ccache`. Developers will have to use the linking trick if they're interested in `ccache` for a project that doesn't have support
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Topic: [SyneRBI/SIRF-SuperBuild] update STIR to rel_4.0.0 (#377)
URL: http://groups.google.com/group/ccp-petmr-codebot/t/128cfbaf4d999ab0
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From: Kris Thielemans <[log in to unmask]>
Date: Apr 26 11:49PM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/18a488628ea05
@KrisThielemans pushed 1 commit.
4160713267dff61c319803c7ff24c3c69db08322 STIR release_4.0 branch
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---------- 2 of 3 ----------
From: Kris Thielemans <[log in to unmask]>
Date: Apr 26 11:58PM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/18ac63e6d8c2f
Another STIR 4.0.0 bug https://github.com/UCL/STIR/issues/520 caused seg-faults in earlier Travis run. hopefully ok now
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---------- 3 of 3 ----------
From: Kris Thielemans <[log in to unmask]>
Date: Apr 27 08:43AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1a76affc311cb
@KrisThielemans pushed 2 commits.
c2f7f36650cd1879448f45a31e545b5305537030 Merge remote-tracking branch 'origin/master' into STIR_v4.0.0
c730c375d5351ba4ff11698efd072dce7359599e update to latest
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Topic: [SyneRBI/SIRF] Proper in-place algebra (#635)
URL: http://groups.google.com/group/ccp-petmr-codebot/t/8618bd3a11bcc83d
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---------- 1 of 5 ----------
From: Evgueni Ovtchinnikov <[log in to unmask]>
Date: Apr 27 02:48AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1941264677157
@evgueni-ovtchinnikov commented on this pull request.
> - diff = new_acq_data - acq_data
+ diff = new_acq_data
+ diff -= acq_data
just was checking `-=`
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---------- 2 of 5 ----------
From: Evgueni Ovtchinnikov <[log in to unmask]>
Date: Apr 27 02:58AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/194958b96aa4f
@evgueni-ovtchinnikov commented on this pull request.
> @@ -378,11 +378,13 @@ complex_float_t a, complex_float_t b)
int n = y.number();
ISMRMRD::Acquisition ax;
ISMRMRD::Acquisition
---------- 3 of 5 ----------
From: Evgueni Ovtchinnikov <[log in to unmask]>
Date: Apr 27 03:03AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/194e2b462eb99
@evgueni-ovtchinnikov commented on this pull request.
> @@ -222,6 +222,7 @@ namespace sirf {
// abstract methods
virtual void empty() = 0;
+ virtual void
---------- 4 of 5 ----------
From: Evgueni Ovtchinnikov <[log in to unmask]>
Date: Apr 27 03:12AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1955ff1549a5b
@evgueni-ovtchinnikov pushed 2 commits.
f0a3e757ff2c86f522bb22a66849fbad2764634c moved in-place algebra tests from examples to tests
06b289d505dbbd19d98b9da85576e5daef3c5bec Merge branch
---------- 5 of 5 ----------
From: Evgueni Ovtchinnikov <[log in to unmask]>
Date: Apr 27 07:06AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1a226c35ab126
Merged #635 into master.
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Topic: [SyneRBI/SIRF] stir.make_Poisson_loglikelihood seems to ignore the model parameter (#567)
URL: http://groups.google.com/group/ccp-petmr-codebot/t/15dbc889fe2de8e4
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---------- 1 of 1 ----------
From: Evgueni Ovtchinnikov <[log in to unmask]>
Date: Apr 27 05:11AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/19bd8c039c96a
Closed #567 via fd573010d15f373799c2492fdba4e7306272d5ea.
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Topic: [SyneRBI/SIRF] occasional Bad file descriptor in cGadgetron (#641)
URL: http://groups.google.com/group/ccp-petmr-codebot/t/d726d5bd72080897
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---------- 1 of 2 ----------
From: Kris Thielemans <[log in to unmask]>
Date: Apr 27 04:22AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/199292278593c
This job https://travis-ci.org/github/SyneRBI/SIRF-SuperBuild/jobs/679959452#L16334
from https://github.com/SyneRBI/SIRF-SuperBuild/pull/377 (which is a `DEVEL` build) fails, while others are fine.
---------- 2 of 2 ----------
From: Evgueni Ovtchinnikov <[log in to unmask]>
Date: Apr 27 04:43AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/19a58e49d3f2d
I have seen this error message in Travis logs many times, but the reported error never ever happened locally, so impossible to investigate, I am afraid.
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Topic: [SyneRBI/SIRF-SuperBuild] Current v2.1.0 build fails due to ITK (#380)
URL: http://groups.google.com/group/ccp-petmr-codebot/t/fb8e501bfc191f3e
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---------- 1 of 3 ----------
From: Kris Thielemans <[log in to unmask]>
Date: Apr 26 11:33PM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/1896e8835f52a
why do you say this? It works for me. Their homepage still points to this repo
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From: Edoardo Pasca <[log in to unmask]>
Date: Apr 26 11:47PM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/18a2af174bb55
I say it because it failed more times for me and I was forced to change the repo to make it work.
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---------- 3 of 3 ----------
From: Kris Thielemans <[log in to unmask]>
Date: Apr 27 12:00AM -0700
URL: http://groups.google.com/group/ccp-petmr-codebot/msg/18ae090b37f88
weird that you had problems. Close this?
For the record, what did you change it to?
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