Hello Amy,
 Can you try the modifications to fslpython_install.sh from this post:

https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind2004&L=FSL&D=0&P=73952

And then retry the installation?

Kind Regards
Matthew
--------------------------------
Dr Matthew Webster
FMRIB Centre 
John Radcliffe Hospital
University of Oxford

On 27 Apr 2020, at 17:48, Amy <[log in to unmask]> wrote:

Hello folks,

I have recently attempted to install FSL on a new machine (running MAC OS 10.14) and have been receiving an error in the final stage of fsl's installation (creating the python environment).

I have tried the suggested hints in the fslwiki to run the fslpython_install.sh separately as well as post_intstall.sh

Any assistance would be great. Thanks!

The error is described here:

$FSLDIR/etc/fslconf/fslpython_install.sh -f $FSLDIR
Stage 1
By installing this python distribution you agree to the license terms in
/usr/local/fsl/fslpython/LICENSE.txt
100%
/usr/local/fsl/etc/fslconf/fslpython_install.sh: line 188: /usr/local/fsl/fslpython/bin/conda: No such file or directory
/usr/local/fsl/etc/fslconf/fslpython_install.sh: line 189: /usr/local/fsl/fslpython/bin/conda: No such file or directory
/usr/local/fsl/etc/fslconf/fslpython_install.sh: line 190: /usr/local/fsl/fslpython/bin/conda: No such file or directory
/usr/local/fsl/etc/fslconf/fslpython_install.sh: line 191: /usr/local/fsl/fslpython/bin/conda: No such file or directory
Stage 2
100%
Failed to create FSL Python environment

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