 |
 |
Hi Steven, Could you please: Send the result of running ls -l /Users/manning.343/Desktop/FSL/1000AT/NIfTI/DOG_run_1_MELODICPreProc.Prox.feat/filtered_func_data.ica Check whether any of the log files mentioned in the below link exist, and whether there are any error messages contained within them. https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FIX/FAQ#When_I_run_FIX.2C_I_obtain_the_following_output:_.2BIBw-No_valid_labelling_file_specified.2BIB0._What_does_it_mean.3F Paul On Mar 23 2020, at 4:33 pm, Manning, Steven T. <[log in to unmask]> wrote: > > Paul, > > Thanks for getting back to me. > > This was my new output with the settings.sh you supplied > manning.343$ /Users/manning.343/Desktop/fix/fix /Users/manning.343/Desktop/FSL/1000AT/NIfTI/DOG_run_1_MELODICPreProc.Prox.feat/filtered_func_data.ica /Users/manning.343/Desktop/fix/training_files/Standard.RData 20 > No valid Melodic output directory specified > No valid Melodic output directory specified > No valid labelling file specified > > Do I need to reset where to find the MATLAB compiled files, etc.? > > Thanks > From: FSL - FMRIB's Software Library <[log in to unmask]> on behalf of paul mccarthy <[log in to unmask]> > Sent: Monday, March 23, 2020 9:35 AM > To: [log in to unmask] <[log in to unmask]> > Subject: Re: [FSL] FIX too many input arguments > > > Hi Steven, > > It looks to me like there are some issues with your settings.sh file - try the attached one instead. > Paul > On Mar 22 2020, at 7:20 pm, Manning, Steven T. <[log in to unmask]> wrote: > > > > Paul, > > > > > > I wanted to reach out and see if you had any input after looking at my settings.sh file. > > > > Thank you, > > > > Steven > > > > From: Manning, Steven T. <[log in to unmask]> > > Sent: Friday, March 20, 2020 1:18 PM > > To: FSL - FMRIB's Software Library <[log in to unmask]> > > Subject: Re: [FSL] FIX too many input arguments > > > > > > > > > > > > Sure! Here it is > > > > > > Steven > > > > > > From: FSL - FMRIB's Software Library <[log in to unmask] (mailto:[log in to unmask])> on behalf of paul mccarthy <[log in to unmask] (mailto:[log in to unmask])> > > Sent: Friday, March 20, 2020 1:10 PM > > To: [log in to unmask] (mailto:[log in to unmask]) <[log in to unmask] (mailto:[log in to unmask])> > > Subject: Re: [FSL] FIX too many input arguments > > > > > > Hi Steven, > > > > > > Would you mind sharing your settings.sh file? > > > > > > Paul > > > > > > On Mar 20 2020, at 5:06 pm, Manning, Steven T. <[log in to unmask] (mailto:[log in to unmask])> wrote: > > > > > > > > > Hello, > > > > > > > > > > > > I am now running FIX through my command line, and I am getting "no valid MELODIC output directory", even though that is the correct file with the MELODIC pre-processing data I ran before the FEAT analysis. > > > > > > > > > > > > Here is my code line: > > > > > > /Users/manning.343/Desktop/fix/fix /Users/manning.343/Desktop/FSL/1000AT/NIfTI/DOG_run_1_MELODICPreProc.Prox.feat/filtered_func_data.ica /Users/manning.343/Desktop/fix/training_files/Standard.RData 20 > > > > > > > > > > > > > > > > > > And here is the output I receive: > > > > > > > > > > > > > > > /Users/manning.343/Desktop/fix/settings.sh: line 41: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory > > > /Users/manning.343/Desktop/fix/settings.sh: line 66: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory > > > > > > /Users/manning.343/Desktop/fix/settings.sh: line 41: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory > > > > > > /Users/manning.343/Desktop/fix/settings.sh: line 66: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory > > > > > > No valid Melodic output directory specified > > > > > > /Users/manning.343/Desktop/fix/settings.sh: line 41: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory > > > > > > /Users/manning.343/Desktop/fix/settings.sh: line 66: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory > > > > > > No valid Melodic output directory specified > > > > > > /Users/manning.343/Desktop/fix/settings.sh: line 41: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory > > > > > > /Users/manning.343/Desktop/fix/settings.sh: line 66: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory > > > > > > No valid labelling file specified > > > > > > > > > > > > > > > > > > > > > > > > Any suggestions on how to fix this? > > > > > > > > > Thank you, > > > > > > > > > > > > Steven Manning > > > > > > > > > > > > > > > > > > > > > > > > From: FSL - FMRIB's Software Library <[log in to unmask] (mailto:[log in to unmask])> on behalf of Manning, Steven T. <[log in to unmask] (mailto:[log in to unmask])> > > > > > > Sent: Thursday, March 19, 2020 10:18 AM > > > > > > To: [log in to unmask] (mailto:[log in to unmask]) <[log in to unmask] (mailto:[log in to unmask])> > > > > > > Subject: Re: [FSL] FIX too many input arguments > > > > > > > > > > > > > > > Hello, > > > > > > > > > > > > > > > I was wondering if anyone had any input on this. Thank you! > > > > > > > > > > > > From: Manning, Steven T. > > > Sent: Wednesday, March 18, 2020 11:34 AM > > > > > > To: [log in to unmask] (mailto:[log in to unmask]) > > > > > > Subject: FIX too many input arguments > > > > > > > > > > > > > > > > > > > > > > > > > > > Hello, > > > > > > > > > > > > > > > I am attempting to run FIX through MATLAB. I believe I have set up R correctly through the README. When I run the FIX line in MATLAB with the ICA file, it does give me an “ans =” with the columns of data. However, when I attempt to run the whole line with the training data that is included in the FIX file, Matlab gives me an “Error using fix, too many input arguments”. What am I doing wrong? > > > > > > > > > > > > > > > I have attempting to set my settings.sh, but I’m not sure I did that right. > > > > > > > > > > > > > > > Any suggestions? > > > > > > > > > > > > > > > Thanks! > > > > > > > > > To unsubscribe from the FSL list, click the following link: > > > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 (https://urldefense.com/v3/__https:/www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1__;!!KGKeukY!km08R6YRCWvYgj_sqMMztvlBJDwIKLMhfFR4e-v8rBx5kthJMgmqy6NoGQPCfLuDYiwZZjgiwZXf0A$) > > > > > > > > > > > > > > > > > > To unsubscribe from the FSL list, click the following link: > > > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 (https://urldefense.com/v3/__https:/www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1__;!!KGKeukY!gQ-YLwxasRhTNl540JpvxT26gaC9I74giRFjpVTXgnBEp0mfZqYbhgegnTJnF66t0HvHIriH1-Bigw$) > > > > > > > > > > > > > > > > To unsubscribe from the FSL list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 (https://urldefense.com/v3/__https:/www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1__;!!KGKeukY!gQ-YLwxasRhTNl540JpvxT26gaC9I74giRFjpVTXgnBEp0mfZqYbhgegnTJnF66t0HvHIriH1-Bigw$) > > > > > > > > > > To unsubscribe from the FSL list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 (https://urldefense.com/v3/__https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1__;!!KGKeukY!h69DhSNQCRrI6xpnE5kg1djTSoCWm5MFkbGQlPXQwVsvWBps5X8oAhre7zTqPsRnyYoz$) > > > > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 (https://urldefense.com/v3/__https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1__;!!KGKeukY!h69DhSNQCRrI6xpnE5kg1djTSoCWm5MFkbGQlPXQwVsvWBps5X8oAhre7zTqPsRnyYoz$) > > > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1