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Paul, 

Thanks for getting back to me. 

This was my new output with the settings.sh you supplied

manning.343$ /Users/manning.343/Desktop/fix/fix /Users/manning.343/Desktop/FSL/1000AT/NIfTI/DOG_run_1_MELODICPreProc.Prox.feat/filtered_func_data.ica /Users/manning.343/Desktop/fix/training_files/Standard.RData  20

No valid Melodic output directory specified

No valid Melodic output directory specified

No valid labelling file specified


Do I need to reset where to find the MATLAB compiled files, etc.? 

Thanks
From: FSL - FMRIB's Software Library <[log in to unmask]> on behalf of paul mccarthy <[log in to unmask]>
Sent: Monday, March 23, 2020 9:35 AM
To: [log in to unmask] <[log in to unmask]>
Subject: Re: [FSL] FIX too many input arguments
 
Hi Steven,

It looks to me like there are some issues with your settings.sh file - try the attached one instead.

Paul

On Mar 22 2020, at 7:20 pm, Manning, Steven T. <[log in to unmask]> wrote:
  
Paul,

 

I wanted to reach out and see if you had any input after looking at my settings.sh file.

 

Thank you,

 

Steven

 

From: Manning, Steven T. <[log in to unmask]>
Sent: Friday, March 20, 2020 1:18 PM
To: FSL - FMRIB's Software Library <[log in to unmask]>
Subject: Re: [FSL] FIX too many input arguments
 

Sure! Here it is
 
Steven

From: FSL - FMRIB's Software Library <[log in to unmask]> on behalf of paul mccarthy <[log in to unmask]>
Sent: Friday, March 20, 2020 1:10 PM
Subject: Re: [FSL] FIX too many input arguments

 
Hi Steven,
 

Would you mind sharing your settings.sh file?
 

Paul
 

On Mar 20 2020, at 5:06 pm, Manning, Steven T. <[log in to unmask]> wrote:
 
Hello,
 
I am now running FIX through my command line, and I am getting "no valid MELODIC output directory", even though that is the correct file with the MELODIC pre-processing data I ran before the FEAT analysis.
 
Here is my code line:
/Users/manning.343/Desktop/fix/fix /Users/manning.343/Desktop/FSL/1000AT/NIfTI/DOG_run_1_MELODICPreProc.Prox.feat/filtered_func_data.ica /Users/manning.343/Desktop/fix/training_files/Standard.RData  20
 
 
And here is the output I receive:
 

/Users/manning.343/Desktop/fix/settings.sh: line 41: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory
/Users/manning.343/Desktop/fix/settings.sh: line 66: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory
/Users/manning.343/Desktop/fix/settings.sh: line 41: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory
/Users/manning.343/Desktop/fix/settings.sh: line 66: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory
No valid Melodic output directory specified
/Users/manning.343/Desktop/fix/settings.sh: line 41: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory
/Users/manning.343/Desktop/fix/settings.sh: line 66: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory
No valid Melodic output directory specified
/Users/manning.343/Desktop/fix/settings.sh: line 41: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory
/Users/manning.343/Desktop/fix/settings.sh: line 66: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory
No valid labelling file specified
 
 
 

Any suggestions on how to fix this?
 
Thank you,
 
Steven Manning
 
 
 
From: FSL - FMRIB's Software Library <[log in to unmask]> on behalf of Manning, Steven T. <[log in to unmask]>
Sent: Thursday, March 19, 2020 10:18 AM
Subject: Re: [FSL] FIX too many input arguments
 
Hello,
 

 
 

I was wondering if anyone had any input on this. Thank you!
 

 
 

From: Manning, Steven T.
Sent: Wednesday, March 18, 2020 11:34 AM
Subject: FIX too many input arguments
 
 

Hello,
 
 

I am attempting to run FIX through MATLAB. I believe I have set up R correctly through the README. When I run the FIX line in MATLAB with the ICA file, it does give me an “ans =” with the columns of data. However, when I attempt to run the whole line with the training data that is included in the FIX file, Matlab gives me an “Error using fix, too many input arguments”.  What am I doing wrong?
 
 

I have attempting to set my settings.sh, but I’m not sure I did that right.
 
 

Any suggestions?
 
 

Thanks!
 

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