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Paul, I wanted to reach out and see if you had any input after looking at my settings.sh file. Thank you, Steven From: Manning, Steven T. <[log in to unmask]> Sent: Friday, March 20, 2020 1:18 PM To: FSL - FMRIB's Software Library <[log in to unmask]> Subject: Re: [FSL] FIX too many input arguments Sure! Here it is Steven ________________________________ From: FSL - FMRIB's Software Library <[log in to unmask]<mailto:[log in to unmask]>> on behalf of paul mccarthy <[log in to unmask]<mailto:[log in to unmask]>> Sent: Friday, March 20, 2020 1:10 PM To: [log in to unmask]<mailto:[log in to unmask]> <[log in to unmask]<mailto:[log in to unmask]>> Subject: Re: [FSL] FIX too many input arguments Hi Steven, Would you mind sharing your settings.sh file? Paul On Mar 20 2020, at 5:06 pm, Manning, Steven T. <[log in to unmask]<mailto:[log in to unmask]>> wrote: Hello, I am now running FIX through my command line, and I am getting "no valid MELODIC output directory", even though that is the correct file with the MELODIC pre-processing data I ran before the FEAT analysis. Here is my code line: /Users/manning.343/Desktop/fix/fix /Users/manning.343/Desktop/FSL/1000AT/NIfTI/DOG_run_1_MELODICPreProc.Prox.feat/filtered_func_data.ica /Users/manning.343/Desktop/fix/training_files/Standard.RData 20 And here is the output I receive: /Users/manning.343/Desktop/fix/settings.sh: line 41: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory /Users/manning.343/Desktop/fix/settings.sh: line 66: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory /Users/manning.343/Desktop/fix/settings.sh: line 41: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory /Users/manning.343/Desktop/fix/settings.sh: line 66: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory No valid Melodic output directory specified /Users/manning.343/Desktop/fix/settings.sh: line 41: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory /Users/manning.343/Desktop/fix/settings.sh: line 66: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory No valid Melodic output directory specified /Users/manning.343/Desktop/fix/settings.sh: line 41: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory /Users/manning.343/Desktop/fix/settings.sh: line 66: /Applications/MATLAB/MATLAB_Runtime/v96: is a directory No valid labelling file specified Any suggestions on how to fix this? Thank you, Steven Manning From: FSL - FMRIB's Software Library <[log in to unmask]<mailto:[log in to unmask]>> on behalf of Manning, Steven T. <[log in to unmask]<mailto:[log in to unmask]>> Sent: Thursday, March 19, 2020 10:18 AM To: [log in to unmask]<mailto:[log in to unmask]> <[log in to unmask]<mailto:[log in to unmask]>> Subject: Re: [FSL] FIX too many input arguments Hello, I was wondering if anyone had any input on this. Thank you! From: Manning, Steven T. Sent: Wednesday, March 18, 2020 11:34 AM To: [log in to unmask]<mailto:[log in to unmask]> Subject: FIX too many input arguments Hello, I am attempting to run FIX through MATLAB. I believe I have set up R correctly through the README. When I run the FIX line in MATLAB with the ICA file, it does give me an "ans =" with the columns of data. However, when I attempt to run the whole line with the training data that is included in the FIX file, Matlab gives me an "Error using fix, too many input arguments". What am I doing wrong? I have attempting to set my settings.sh, but I'm not sure I did that right. Any suggestions? Thanks! To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1<https://urldefense.com/v3/__https:/www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1__;!!KGKeukY!km08R6YRCWvYgj_sqMMztvlBJDwIKLMhfFR4e-v8rBx5kthJMgmqy6NoGQPCfLuDYiwZZjgiwZXf0A$> To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1<https://urldefense.com/v3/__https:/www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1__;!!KGKeukY!gQ-YLwxasRhTNl540JpvxT26gaC9I74giRFjpVTXgnBEp0mfZqYbhgegnTJnF66t0HvHIriH1-Bigw$> ________________________________ To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1<https://urldefense.com/v3/__https:/www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1__;!!KGKeukY!gQ-YLwxasRhTNl540JpvxT26gaC9I74giRFjpVTXgnBEp0mfZqYbhgegnTJnF66t0HvHIriH1-Bigw$> ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1