Dear FSL experts,
I was not able to find a specific answer in the posts for the following problem.
I am trying to substract two masks from each other: one manually created and one as output from Freesurfer. They are both in native space. I thus ran:
fslmaths T1mask.nii - sub CSOmask.nii T1-CSO.nii
The following error appears:
WARNING:: Inconsistent orientations for individual images in pipeline!
Will use voxel-based orientation which is probably incorrect - *PLEASE CHECK*!
Image Exception : #3 :: Attempted to subtract images of different sizes
libc++abi.dylib: terminating with uncaught exception of type std::runtime_error: Attempted to subtract images of different sizes
Abort trap: 6
these nii seem to have different voxel sizes when I checked using fslstats -v
Is there a solution for this? Maybe some kind of crop tool in FSL?
Many thanks for the support!
/Ben
########################################################################
To unsubscribe from the FSL list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1
