Hi Ishi,

Can you check the contents of your MATLAB path to ensure that startup.m was actually called, and correctly added /use/local/fsl/etc/matlab/  to the path?

Paul

On Feb 22 2020, at 1:43 pm, Ishi Tandon <[log in to unmask]> wrote:

Dear FSL experts,

I am trying to run FSL commands through Matlab (version R2017b). But it seems I can't do that. 

Following the protocol as mentioned. I went to /usr/local/fsl/etc/matlab/call_fsl.m. 

I also set the path in the startup.m file in the matlab directory having the following commands.

% FSL Setup

setenv( 'FSLDIR', '/usr/local/fsl' );

fsldir = getenv('FSLDIR');

fsldirmpath = sprintf('%s/etc/matlab',fsldir);

path(path, fsldirmpath);

clear fsldir fsldirmpath;

It still doesn't works for me. I would be grateful, if you could help me with this. Thanks for your time. 

Regards,

Ishi Tandon

B.tech + M.tech - Cognitive & Neuroscience

Amity University, Rajasthan

contact - +918239259846 ; Email- [log in to unmask]

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