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This might help you:
http://starlink.eao.hawaii.edu/docs/sun95.htx/sun95se12.html#x13-950001

You need to understand the difference between PIXEL and GRID coordinate
frames.

On Wed, Nov 6, 2019 at 4:21 PM Helen Kirk <[log in to unmask]> wrote:

> Hi Sarah,
>
> Ah, thanks!  I did not think to look near the centre of the image when
> adding something in at 1,1, but I do see the changed pixel now.
> (Interestingly, it doesn't show up in gaia's maximum pixel value listing,
> which I was using as a second indicator of whether the change had worked.)
>
> If you have some insight as to how I convert from pixel coordinates in
> gaia to pixel coordinates in kappa (when you are at the right computer),
> that would be really helpful for me to figure out how to code up what I'm
> eventually trying to do with chpix.
>
> thanks very much to you and Malcolm for all of your help!
>
> Helen
>
>
> On 11/06/2019 03:12 PM, Sarah Graves wrote:
>
> Hi Helen,
>
> I'm not sure but I think the issue might be that the coordinates Gaia
> displays are not the same pixel coordinates that kappa is using.
>
> Based on your email, 1,1 in kappa will be near the center of the array.
> There is an option in Gaia to bring up another window displaying more pixel
> coordinates, I think it's under the change coordinate option. I'll be on my
> computer later and can check properly then,
>
> Sarah
>
>
> On Thu, Nov 7, 2019, 06:26 Helen Kirk <[log in to unmask]> wrote:
>
>> Thanks, Malcolm -- as far as I can tell, the pixel is in the bounds of
>> the NDF.  ndftrace gives the following:
>>
>>    Shape:
>>        No. of dimensions:  2
>>        Dimension size(s):  801 x 800
>>        Pixel bounds     :  -399:401, -398:401
>>
>> When I hover my mouse over the pixels in gaia, the RA and dec fields
>> start giving values at (0,0).  For completeness, I also just tried
>> changing a pixel at (401,401) which is near the apparent centre of the
>> image and should be visible even if there are 0-point issues -  nothing
>> appears for that either.
>>
>> Helen
>>
>>
>> On 11/06/2019 02:14 PM, Malcolm J. Currie wrote:
>> > Helen,
>> >
>> > Is the pixel you want to change inside the bounds of your NDF? You
>> > selected pixel indices (1,1). "ndftrace test" will tell you. You can
>> > also supply WCS co-ordinates too.  Parameter SECTION uses the same
>> > syntax as NDF sections to access a subset, or indeed a superset, of
>> > your NDF.
>> >
>> > By the way, in KAPPA V2.6, you can supply a text file listing many
>> > sections and their replacement values.  I found that I needed this
>> > facility to mask some transient narrow artefacts in HARP time-series
>> > cubes.
>> >
>> > Malcolm
>> >
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