On 12 Nov 2019, at 20:21, Divesh Thaploo <[log in to unmask]> wrote:
I mean to say of the two files you asked, only of it is present.
Divesh Thaploo
Smell and Taste Clinic
Dept of ORL, TU Dresden
Germany
Hello
There is only one file _struc_GM. Not the other one.
Divesh Thaploo
Smell and Taste Clinic
Dept of ORL, TU Dresden
Germany
Hello,For each file in your template_list, can you confirm that there is a file called
<originalname>_struc_GM and <originalname>_struc_GM_to_T in the struc sub-directory?
Kind RegardsMatthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford
On 12 Nov 2019, at 16:51, Divesh Thaploo <[log in to unmask]> wrote:
The error is actually in fslswapdim.
Divesh Thaploo
Smell and Taste Clinic
Dept of ORL, TU Dresden
Germany
HelloNo there is no other error.
Divesh Thaploo
Smell and Taste Clinic
Dept of ORL, TU Dresden
Germany
Hello,Are there any error messages in the *.e* and *.o* log files for the fslvbm sub jobs?Kind RegardsMatthew
--------------------------------
Dr Matthew Webster
FMRIB Centre
John Radcliffe Hospital
University of Oxford
On 12 Nov 2019, at 15:26, Divesh Thaploo <[log in to unmask]> wrote:
Hello FSL
The error is consistent with smaller no of subjects as well.
It says
unning segmentation: ID=64663
Running initial registration: ID=64926
Image Exception : #63 :: No image files match: 1_002_s_####_struc_GM_to_T
libc++abi.dylib: terminating with uncaught exception of type
std::runtime_error: No image files match: 1_002_s_####_struc_GM_to_T
./fslvbm2c: line 13: 68739 Abort trap: 6
$FSLDIR/bin/fslmerge -t template_4D_GM $mergelist
and it continues.
Regards,
Divesh Thaploo
Smell and Taste Clinic
Dept of ORL, Carl Gustav Carus
TU Dresden, Germany
+49 177 4236 487
Skype-ID: dthaploo
On Tue, Nov 12, 2019 at 10:36 AM Divesh Thaploo <[log in to unmask]> wrote:
Hello
I have 4 groups with different no of subjects. i created template_list based on lowest no of subjects in one of the group. fslvbm_1_bet works fine. but fslvbm_2_template creates error. The error says no image file matches template_GM
Any help would be appreciated. Meanwhile i will re run with smaller group just to see whether it works or not.
Note: The name of patients is in order like, 10,11,12,13,14,15,16,17,18,19,1,20,2,3,4,5,6,7,8,9.
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