Hello, This would imply that the fslvbm2b step had failed - can you double check that the fslvbm2b .o and .e files don’t contain any messages? Kind Regards Matthew -------------------------------- Dr Matthew Webster FMRIB Centre John Radcliffe Hospital University of Oxford On 12 Nov 2019, at 20:21, Divesh Thaploo <[log in to unmask]<mailto:[log in to unmask]>> wrote: I mean to say of the two files you asked, only of it is present. Divesh Thaploo Smell and Taste Clinic Dept of ORL, TU Dresden Germany On Tue, Nov 12, 2019, 8:10 PM Divesh Thaploo <[log in to unmask]<mailto:[log in to unmask]>> wrote: Hello There is only one file _struc_GM. Not the other one. Divesh Thaploo Smell and Taste Clinic Dept of ORL, TU Dresden Germany On Tue, Nov 12, 2019, 6:00 PM Matthew Webster <[log in to unmask]<mailto:[log in to unmask]>> wrote: Hello, For each file in your template_list, can you confirm that there is a file called <originalname>_struc_GM and <originalname>_struc_GM_to_T in the struc sub-directory? Kind Regards Matthew -------------------------------- Dr Matthew Webster FMRIB Centre John Radcliffe Hospital University of Oxford On 12 Nov 2019, at 16:51, Divesh Thaploo <[log in to unmask]<mailto:[log in to unmask]>> wrote: The error is actually in fslswapdim. Divesh Thaploo Smell and Taste Clinic Dept of ORL, TU Dresden Germany On Tue, Nov 12, 2019, 5:50 PM Divesh Thaploo <[log in to unmask]<mailto:[log in to unmask]>> wrote: Hello No there is no other error. Divesh Thaploo Smell and Taste Clinic Dept of ORL, TU Dresden Germany On Tue, Nov 12, 2019, 5:36 PM Matthew Webster <[log in to unmask]<mailto:[log in to unmask]>> wrote: Hello, Are there any error messages in the *.e* and *.o* log files for the fslvbm sub jobs? Kind Regards Matthew -------------------------------- Dr Matthew Webster FMRIB Centre John Radcliffe Hospital University of Oxford On 12 Nov 2019, at 15:26, Divesh Thaploo <[log in to unmask]<mailto:[log in to unmask]>> wrote: Hello FSL The error is consistent with smaller no of subjects as well. It says unning segmentation: ID=64663 Running initial registration: ID=64926 Image Exception : #63 :: No image files match: 1_002_s_####_struc_GM_to_T libc++abi.dylib: terminating with uncaught exception of type std::runtime_error: No image files match: 1_002_s_####_struc_GM_to_T ./fslvbm2c: line 13: 68739 Abort trap: 6 $FSLDIR/bin/fslmerge -t template_4D_GM $mergelist and it continues. Regards, Divesh Thaploo Smell and Taste Clinic Dept of ORL, Carl Gustav Carus TU Dresden, Germany +49 177 4236 487 Skype-ID: dthaploo On Tue, Nov 12, 2019 at 10:36 AM Divesh Thaploo <[log in to unmask]<mailto:[log in to unmask]>> wrote: Hello I have 4 groups with different no of subjects. i created template_list based on lowest no of subjects in one of the group. fslvbm_1_bet works fine. but fslvbm_2_template creates error. The error says no image file matches template_GM Any help would be appreciated. Meanwhile i will re run with smaller group just to see whether it works or not. Note: The name of patients is in order like, 10,11,12,13,14,15,16,17,18,19,1,20,2,3,4,5,6,7,8,9. ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 ________________________________ To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 ________________________________ To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 ________________________________ To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 ________________________________ To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1