Dear Tobias,
I have updated Xcode but unfortunately this did not solve the problem. I
still receive the same error message. Any other suggestions? My colleague
also uses MacBook and she doesn't have the problem with SPM.
Best,
Hamzah
On Thu, Oct 10, 2019 at 1:38 PM Heed, Tobias <[log in to unmask]>
wrote:
> Dear Hamzah,
>
> did you install the XCode update? I believe this update is separate from
> the MacOS update. if files are compiled during installation, this might
> solve the problem.
>
> Tobias
>
> —
> [log in to unmask]
> http://www.uni-bielefeld.de/psychologie/abteilung/arbeitseinheiten/14/
>
> Prof. Dr. Tobias Heed
> Biopsychology & Cognitive Neuroscience (AE14) / Reach & Touch Lab
> Faculty of Psychology & Sports Science | Bielefeld University
> Postfach 10 01 31 | D-33501 Bielefeld, Germany
> Phone: (49) 521 - 106 67 530 | Fax: (49) 521 - 106 15 67 530
> Office: UHG T3-256
> Twitter: @HeedLab <http://www.twitter.com/heedlab>
>
> On 10. Oct 2019, at 13:29, Hamzah Baagil <[log in to unmask]> wrote:
>
> I have restarted MATLAB, but received the same error message. This is what
> I got for
> spm_bsplinc(1,ones(1,6))
>
> Invalid MEX-file
> '/Users/hamzahbaagil/Documents/MATLAB/spm12/spm_bsplinc.mexmaci64':
> dlopen(/Users/hamzahbaagil/Documents/MATLAB/spm12/spm_bsplinc.mexmaci64,
> 6): no suitable image found. Did find:
> /Users/hamzahbaagil/Documents/MATLAB/spm12/spm_bsplinc.mexmaci64: code
> signature in
> (/Users/hamzahbaagil/Documents/MATLAB/spm12/spm_bsplinc.mexmaci64)
> not valid for use in process using Library
> Validation: library load disallowed by system policy
>
> Best,
> Hamzah
>
> On Thu, Oct 10, 2019 at 1:17 PM Flandin, Guillaume <[log in to unmask]>
> wrote:
>
>> Dear Hamzah,
>>
>> macOS Catalina was released 2 days ago so I don't have any feedbacks
>> about it yet. Apart from a few harmless warnings, it seems that the
>> compilation went fine so the fact that SPM is not working afterwards is a
>> bit surprising. Have you restarted MATLAB after compilation? What error
>> message do you get when running the following?
>>
>> spm_bsplinc(1,ones(1,6))
>>
>> Best regards,
>> Guillaume.
>>
>> ------------------------------
>> *From:* SPM (Statistical Parametric Mapping) <[log in to unmask]> on
>> behalf of Hamzah Baagil <[log in to unmask]>
>> *Sent:* 10 October 2019 11:18
>> *To:* [log in to unmask] <[log in to unmask]>
>> *Subject:* [SPM] SPM installation macOS Catalina
>>
>> Dear all,
>>
>>
>> I would appreciate any help, since I have a problem using SPM12 on my
>> Imac MacOS Catalina.
>> I keep getting this error message:
>>
>>
>> Error using spm_check_installation>check_basic (line 152)
>> SPM uses a number of MEX files, which are compiled functions.
>> These need to be compiled for the various platforms on which SPM
>> is run. It seems that the compiled files for your computer platform
>> are missing or not compatible. See
>> https://www.wikibooks.org/wiki/SPM#Installation
>> <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.wikibooks.org%2Fwiki%2FSPM%23Installation&data=02%7C01%7C%7C728d58d2b63244f62cb508d74d6b50a8%7C1faf88fea9984c5b93c9210a11d9a5c2%7C0%7C1%7C637062995630882636&sdata=IpwcD7OHByqJrW6m3RquDPu%2BQq%2FL6mTob1I9tWB1hv4%3D&reserved=0>
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/Makefile
>> for information about how to compile MEX files for MACI64
>> in MATLAB 9.7.0.1190202 (R2019b).
>>
>>
>> Error in spm_check_installation (line 28)
>> check_basic;
>>
>>
>> Error in spm (line 290)
>> spm_check_installation('basic');
>>
>>
>> I have followed the compilation process from the wiki, however I still
>> receive the same error message. This is what I got from the terminal:
>>
>>
>> 074-018:src hamzahbaagil$ make distclean
>> _____________________________________________________________
>>
>>
>> Deleting object (.o) files
>> _____________________________________________________________
>>
>>
>> rm -f utils_uchar.mexmaci64.o utils_short.mexmaci64.o
>> utils_int.mexmaci64.o utils_schar.mexmaci64.o utils_ushort.mexmaci64.o
>> utils_uint.mexmaci64.o utils_float.mexmaci64.o utils_double.mexmaci64.o
>> utils_short_s.mexmaci64.o utils_int_s.mexmaci64.o
>> utils_ushort_s.mexmaci64.o utils_uint_s.mexmaci64.o
>> utils_float_s.mexmaci64.o utils_double_s.mexmaci64.o
>> spm_make_lookup.mexmaci64.o spm_getdata.mexmaci64.o
>> spm_vol_access.mexmaci64.o spm_mapping.mexmaci64.o
>> _____________________________________________________________
>>
>>
>> Deleting MEX (.mexmaci64) and archive (.a) files
>> _____________________________________________________________
>>
>>
>> rm -f spm_sample_vol.mexmaci64 spm_slice_vol.mexmaci64
>> spm_brainwarp.mexmaci64 spm_add.mexmaci64 spm_conv_vol.mexmaci64
>> spm_render_vol.mexmaci64 spm_global.mexmaci64 spm_resels_vol.mexmaci64
>> spm_bsplinc.mexmaci64 spm_bsplins.mexmaci64 spm_unlink.mexmaci64
>> spm_existfile.mexmaci64 spm_gamrnd.mexmaci64 spm_hist.mexmaci64
>> spm_krutil.mexmaci64 spm_project.mexmaci64 spm_hist2.mexmaci64
>> spm_dilate_erode.mexmaci64 spm_bwlabel.mexmaci64 spm_get_lm.mexmaci64
>> spm_voronoi.mexmaci64 spm_mesh_utils.mexmaci64 spm_mrf.mexmaci64
>> spm_diffeo.mexmaci64 spm_field.mexmaci64 spm_cat.mexmaci64
>> spm_jsonread.mexmaci64 spm_mesh_reduce.mexmaci64 spm_vol_utils.mexmaci64.a
>> rm -f file2mat.mexmaci64 mat2file.mexmaci64 init.mexmaci64
>> rm -f zstream.mexmaci64
>> rm -f xml_findstr.mexmaci64
>> rm -f pm_invert_phasemap_dtj.mexmaci64 pm_merge_regions.mexmaci64
>> pm_create_connectogram_dtj.mexmaci64 pm_pad.mexmaci64
>> pm_estimate_ramp.mexmaci64 pm_restore_ramp.mexmaci64 pm_ff_unwrap.mexmaci64
>>
>> _____________________________________________________________
>>
>>
>> Distclean: done
>> _____________________________________________________________
>>
>>
>> 074-018:src hamzahbaagil$ make && make install
>> _____________________________________________________________
>>
>>
>> MacOS compilation (Intel 64 bit)
>> _____________________________________________________________
>>
>>
>> mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_UNSIGNED_CHAR
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_vol_utils.o utils_uchar.mexmaci64.o
>> mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_SIGNED_SHORT
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_vol_utils.o utils_short.mexmaci64.o
>> mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_SIGNED_INT
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_vol_utils.o utils_int.mexmaci64.o
>> mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_SIGNED_CHAR
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_vol_utils.o utils_schar.mexmaci64.o
>> mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_UNSIGNED_SHORT
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_vol_utils.o utils_ushort.mexmaci64.o
>> mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_UNSIGNED_INT
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_vol_utils.o utils_uint.mexmaci64.o
>> mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_FLOAT
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_vol_utils.o utils_float.mexmaci64.o
>> mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_DOUBLE
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_vol_utils.o utils_double.mexmaci64.o
>> mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_SIGNED_SHORT
>> -DSPM_BYTESWAP
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_vol_utils.o utils_short_s.mexmaci64.o
>> mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_SIGNED_INT -DSPM_BYTESWAP
>>
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_vol_utils.o utils_int_s.mexmaci64.o
>> mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_UNSIGNED_SHORT
>> -DSPM_BYTESWAP
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_vol_utils.o utils_ushort_s.mexmaci64.o
>> mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_UNSIGNED_INT
>> -DSPM_BYTESWAP
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_vol_utils.o utils_uint_s.mexmaci64.o
>> mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_FLOAT -DSPM_BYTESWAP
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_vol_utils.o utils_float_s.mexmaci64.o
>> mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_DOUBLE -DSPM_BYTESWAP
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_vol_utils.o utils_double_s.mexmaci64.o
>> mex -O -largeArrayDims -c spm_make_lookup.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_make_lookup.o spm_make_lookup.mexmaci64.o
>> mex -O -largeArrayDims -c spm_getdata.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_getdata.o spm_getdata.mexmaci64.o
>> mex -O -largeArrayDims -c spm_vol_access.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f spm_vol_access.o spm_vol_access.mexmaci64.o
>> mex -O -largeArrayDims -c spm_mapping.c
>> Building with 'Xcode with Clang'.
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:139:30:
>> warning: '&&' within '||' [-Wlogical-op-parentheses]
>> if (!((pr[0] == 2) && (dtype == SPM_UNSIGNED_CHAR) ||
>> ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:139:30:
>> note: place parentheses around the '&&' expression to silence this warning
>> if (!((pr[0] == 2) && (dtype == SPM_UNSIGNED_CHAR) ||
>> ^
>> ( )
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:140:30:
>> warning: '&&' within '||' [-Wlogical-op-parentheses]
>> (pr[0] == 256) && (dtype == SPM_SIGNED_CHAR) ||
>> ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:140:30:
>> note: place parentheses around the '&&' expression to silence this warning
>> (pr[0] == 256) && (dtype == SPM_SIGNED_CHAR) ||
>> ^
>> ( )
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:141:30:
>> warning: '&&' within '||' [-Wlogical-op-parentheses]
>> (pr[0] == 4) && (dtype == SPM_SIGNED_SHORT) ||
>> ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:141:30:
>> note: place parentheses around the '&&' expression to silence this warning
>> (pr[0] == 4) && (dtype == SPM_SIGNED_SHORT) ||
>> ^
>> ( )
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:142:30:
>> warning: '&&' within '||' [-Wlogical-op-parentheses]
>> (pr[0] == 512) && (dtype == SPM_UNSIGNED_SHORT) ||
>> ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:142:30:
>> note: place parentheses around the '&&' expression to silence this warning
>> (pr[0] == 512) && (dtype == SPM_UNSIGNED_SHORT) ||
>> ^
>> ( )
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:143:30:
>> warning: '&&' within '||' [-Wlogical-op-parentheses]
>> (pr[0] == 8) && (dtype == SPM_SIGNED_INT) ||
>> ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:143:30:
>> note: place parentheses around the '&&' expression to silence this warning
>> (pr[0] == 8) && (dtype == SPM_SIGNED_INT) ||
>> ^
>> ( )
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:144:30:
>> warning: '&&' within '||' [-Wlogical-op-parentheses]
>> (pr[0] == 768) && (dtype == SPM_UNSIGNED_INT) ||
>> ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:144:30:
>> note: place parentheses around the '&&' expression to silence this warning
>> (pr[0] == 768) && (dtype == SPM_UNSIGNED_INT) ||
>> ^
>> ( )
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:145:30:
>> warning: '&&' within '||' [-Wlogical-op-parentheses]
>> (pr[0] == 16) && (dtype == SPM_FLOAT) ||
>> ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:145:30:
>> note: place parentheses around the '&&' expression to silence this warning
>> (pr[0] == 16) && (dtype == SPM_FLOAT) ||
>> ^
>> ( )
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:146:30:
>> warning: '&&' within '||' [-Wlogical-op-parentheses]
>> (pr[0] == 64) && (dtype == SPM_DOUBLE)))
>> ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/src/spm_mapping.c:146:30:
>> note: place parentheses around the '&&' expression to silence this warning
>> (pr[0] == 64) && (dtype == SPM_DOUBLE)))
>> ^
>> ( )
>> 8 warnings generated.
>>
>>
>> MEX completed successfully.
>> mv -f spm_mapping.o spm_mapping.mexmaci64.o
>> rm -f spm_vol_utils.mexmaci64.a
>> ar rcs spm_vol_utils.mexmaci64.a utils_uchar.mexmaci64.o
>> utils_short.mexmaci64.o utils_int.mexmaci64.o utils_schar.mexmaci64.o
>> utils_ushort.mexmaci64.o utils_uint.mexmaci64.o utils_float.mexmaci64.o
>> utils_double.mexmaci64.o utils_short_s.mexmaci64.o utils_int_s.mexmaci64.o
>> utils_ushort_s.mexmaci64.o utils_uint_s.mexmaci64.o
>> utils_float_s.mexmaci64.o utils_double_s.mexmaci64.o
>> spm_make_lookup.mexmaci64.o spm_getdata.mexmaci64.o
>> spm_vol_access.mexmaci64.o spm_mapping.mexmaci64.o
>> mex -O -largeArrayDims spm_sample_vol.c spm_vol_utils.mexmaci64.a
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_slice_vol.c spm_vol_utils.mexmaci64.a
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_brainwarp.c spm_vol_utils.mexmaci64.a
>> spm_matfuns.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_add.c spm_vol_utils.mexmaci64.a
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_conv_vol.c spm_vol_utils.mexmaci64.a
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_render_vol.c spm_vol_utils.mexmaci64.a
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_global.c spm_vol_utils.mexmaci64.a
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_resels_vol.c spm_vol_utils.mexmaci64.a
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_bsplinc.c bsplines.c spm_vol_utils.mexmaci64.a
>>
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_bsplins.c bsplines.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_unlink.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_existfile.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_gamrnd.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_hist.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_krutil.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_project.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_hist2.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_dilate_erode.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_bwlabel.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_get_lm.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_voronoi.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_mesh_utils.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_mrf.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_diffeo.c shoot_diffeo3d.c shoot_optim3d.c
>> shoot_multiscale.c shoot_regularisers.c shoot_expm3.c shoot_invdef.c
>> shoot_dartel.c shoot_boundary.c shoot_bsplines.c bsplines.c -DIMAGE_SINGLE
>>
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_field.c shoot_optimN.c shoot_multiscale.c
>> shoot_boundary.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_cat.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_jsonread.c jsmn.c -DJSMN_PARENT_LINKS
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims spm_mesh_reduce.cpp
>> Building with 'Xcode Clang++'.
>> MEX completed successfully.
>> mex -O -largeArrayDims file2mat.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims mat2file.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims init.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims CFLAGS='$CFLAGS -std=c99' zstream.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims xml_findstr.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims pm_invert_phasemap_dtj.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims pm_merge_regions.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims pm_create_connectogram_dtj.c
>> Building with 'Xcode with Clang'.
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/toolbox/FieldMap/pm_create_connectogram_dtj.c:44:24:
>> warning: using the result of an assignment as a condition without
>> parentheses [-Wparentheses]
>> if (cr = rima[cri = index(r,c,sl,dim)])
>> ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/toolbox/FieldMap/pm_create_connectogram_dtj.c:44:24:
>> note: place parentheses around the assignment to silence this warning
>> if (cr = rima[cri = index(r,c,sl,dim)])
>> ^
>> ( )
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/toolbox/FieldMap/pm_create_connectogram_dtj.c:44:24:
>> note: use '==' to turn this assignment into an equality comparison
>> if (cr = rima[cri = index(r,c,sl,dim)])
>> ^
>> ==
>> 1 warning generated.
>>
>>
>> MEX completed successfully.
>> mex -O -largeArrayDims pm_pad.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims pm_estimate_ramp.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims pm_restore_ramp.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims pm_ff_unwrap.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> _____________________________________________________________
>>
>>
>> Compilation: done
>> _____________________________________________________________
>>
>>
>> _____________________________________________________________
>>
>>
>> Installing MEX files
>> _____________________________________________________________
>>
>>
>> cp -f spm_sample_vol.mexmaci64 spm_slice_vol.mexmaci64
>> spm_brainwarp.mexmaci64 spm_add.mexmaci64 spm_conv_vol.mexmaci64
>> spm_render_vol.mexmaci64 spm_global.mexmaci64 spm_resels_vol.mexmaci64
>> spm_bsplinc.mexmaci64 spm_bsplins.mexmaci64 spm_unlink.mexmaci64
>> spm_existfile.mexmaci64 spm_gamrnd.mexmaci64 spm_hist.mexmaci64
>> spm_krutil.mexmaci64 spm_project.mexmaci64 spm_hist2.mexmaci64
>> spm_dilate_erode.mexmaci64 spm_bwlabel.mexmaci64 spm_get_lm.mexmaci64
>> spm_voronoi.mexmaci64 spm_mesh_utils.mexmaci64 spm_mrf.mexmaci64
>> spm_diffeo.mexmaci64 spm_field.mexmaci64 spm_cat.mexmaci64
>> spm_jsonread.mexmaci64 spm_mesh_reduce.mexmaci64 ..
>> mv -f ../spm_brainwarp.mexmaci64 ../toolbox/OldNorm
>> _____________________________________________________________
>>
>>
>> Installation: done
>> _____________________________________________________________
>>
>>
>> 074-018:src hamzahbaagil$ make external-distclean
>> _____________________________________________________________
>>
>>
>> In external
>> _____________________________________________________________
>>
>>
>> _____________________________________________________________
>>
>>
>> fieldtrip
>> _____________________________________________________________
>>
>>
>> make[2]: Nothing to be done for `clean'.
>> _____________________________________________________________
>>
>>
>> bemcp
>> _____________________________________________________________
>>
>>
>> make[2]: Nothing to be done for `clean'.
>> _____________________________________________________________
>>
>>
>> fieldtrip
>> _____________________________________________________________
>>
>>
>> rm -f fieldtrip/src/read_24bit.mexmaci64
>> fieldtrip/src/read_16bit.mexmaci64 fieldtrip/src/ft_getopt.mexmaci64
>> fieldtrip/src/nanmean.mexmaci64 fieldtrip/src/nanstd.mexmaci64
>> fieldtrip/src/nansum.mexmaci64 fieldtrip/src/nanvar.mexmaci64
>> fieldtrip/src/meg_leadfield1.mexmaci64 fieldtrip/src/ptriproj.mexmaci64
>> fieldtrip/src/lmoutr.mexmaci64 fieldtrip/src/plgndr.mexmaci64
>> fieldtrip/src/solid_angle.mexmaci64 fieldtrip/src/routlm.mexmaci64
>> fieldtrip/src/ltrisect.mexmaci64 fieldtrip/src/plinproj.mexmaci64
>> fieldtrip/src/splint_gh.mexmaci64
>> _____________________________________________________________
>>
>>
>> bemcp
>> _____________________________________________________________
>>
>>
>> rm -f bem_Cii_cog.mexmaci64 bem_Cii_cst.mexmaci64 bem_Cii_lin.mexmaci64
>> bem_Cij_cog.mexmaci64 bem_Cij_cst.mexmaci64 bem_Cij_lin.mexmaci64
>> bem_Gi_cog.mexmaci64 bem_Gi_vert.mexmaci64
>> 074-018:src hamzahbaagil$ make external &&b make external-install
>> _____________________________________________________________
>>
>>
>> In external
>> _____________________________________________________________
>>
>>
>> _____________________________________________________________
>>
>>
>> fieldtrip
>> _____________________________________________________________
>>
>>
>> mex -O -largeArrayDims fieldtrip/src/read_24bit.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f read_24bit.mexmaci64 fieldtrip/src/
>> mex -O -largeArrayDims fieldtrip/src/read_16bit.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f read_16bit.mexmaci64 fieldtrip/src/
>> mex -O -largeArrayDims fieldtrip/src/ft_getopt.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f ft_getopt.mexmaci64 fieldtrip/src/
>> mex -O -largeArrayDims fieldtrip/src/nanmean.c
>> Building with 'Xcode with Clang'.
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/nanmean.c:249:41:
>> warning: passing 'const mxArray **' (aka 'const struct mxArray_tag **') to
>> parameter of type 'mxArray **' (aka 'struct mxArray_tag **') discards
>> qualifiers in nested pointer types
>> [-Wincompatible-pointer-types-discards-qualifiers]
>> mexCallMATLAB(nlhs, plhs, nrhs, prhs, "mean");
>> ^~~~
>> /Applications/MATLAB_R2019b.app/extern/include/mex.h:226:14: note:
>> passing argument to parameter 'prhs' here
>> mxArray *prhs[], /* pointer array to inputs */
>> ^
>> 1 warning generated.
>>
>>
>> MEX completed successfully.
>> mv -f nanmean.mexmaci64 fieldtrip/src/
>> mex -O -largeArrayDims fieldtrip/src/nanstd.c
>> Building with 'Xcode with Clang'.
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/nanstd.c:338:41:
>> warning: passing 'const mxArray **' (aka 'const struct mxArray_tag **') to
>> parameter of type 'mxArray **' (aka 'struct mxArray_tag **') discards
>> qualifiers in nested pointer types
>> [-Wincompatible-pointer-types-discards-qualifiers]
>> mexCallMATLAB(nlhs, plhs, nrhs, prhs, "std");
>> ^~~~
>> /Applications/MATLAB_R2019b.app/extern/include/mex.h:226:14: note:
>> passing argument to parameter 'prhs' here
>> mxArray *prhs[], /* pointer array to inputs */
>> ^
>> 1 warning generated.
>>
>>
>> MEX completed successfully.
>> mv -f nanstd.mexmaci64 fieldtrip/src/
>> mex -O -largeArrayDims fieldtrip/src/nansum.c
>> Building with 'Xcode with Clang'.
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/nansum.c:223:41:
>> warning: passing 'const mxArray **' (aka 'const struct mxArray_tag **') to
>> parameter of type 'mxArray **' (aka 'struct mxArray_tag **') discards
>> qualifiers in nested pointer types
>> [-Wincompatible-pointer-types-discards-qualifiers]
>> mexCallMATLAB(nlhs, plhs, nrhs, prhs, "sum");
>> ^~~~
>> /Applications/MATLAB_R2019b.app/extern/include/mex.h:226:14: note:
>> passing argument to parameter 'prhs' here
>> mxArray *prhs[], /* pointer array to inputs */
>> ^
>> 1 warning generated.
>>
>>
>> MEX completed successfully.
>> mv -f nansum.mexmaci64 fieldtrip/src/
>> mex -O -largeArrayDims fieldtrip/src/nanvar.c
>> Building with 'Xcode with Clang'.
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/nanvar.c:338:41:
>> warning: passing 'const mxArray **' (aka 'const struct mxArray_tag **') to
>> parameter of type 'mxArray **' (aka 'struct mxArray_tag **') discards
>> qualifiers in nested pointer types
>> [-Wincompatible-pointer-types-discards-qualifiers]
>> mexCallMATLAB(nlhs, plhs, nrhs, prhs, "var");
>> ^~~~
>> /Applications/MATLAB_R2019b.app/extern/include/mex.h:226:14: note:
>> passing argument to parameter 'prhs' here
>> mxArray *prhs[], /* pointer array to inputs */
>> ^
>> 1 warning generated.
>>
>>
>> MEX completed successfully.
>> mv -f nanvar.mexmaci64 fieldtrip/src/
>> mex -O -largeArrayDims fieldtrip/src/meg_leadfield1.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f meg_leadfield1.mexmaci64 fieldtrip/src/
>> mex -O -largeArrayDims fieldtrip/src/ptriproj.c fieldtrip/src/geometry.c
>> Building with 'Xcode with Clang'.
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/geometry.c:176:15:
>> warning: implicit declaration of function 'mxGetNaN' is invalid in C99
>> [-Wimplicit-function-declaration]
>> proj[0] = mxGetNaN();
>> ^
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/geometry.c:219:11:
>> warning: implicit declaration of function 'mxGetNaN' is invalid in C99
>> [-Wimplicit-function-declaration]
>> *la = mxGetNaN();
>> ^
>> 2 warnings generated.
>>
>>
>> MEX completed successfully.
>> mv -f ptriproj.mexmaci64 fieldtrip/src/
>> mex -O -largeArrayDims fieldtrip/src/lmoutr.c fieldtrip/src/geometry.c
>> Building with 'Xcode with Clang'.
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/geometry.c:176:15:
>> warning: implicit declaration of function 'mxGetNaN' is invalid in C99
>> [-Wimplicit-function-declaration]
>> proj[0] = mxGetNaN();
>> ^
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/geometry.c:219:11:
>> warning: implicit declaration of function 'mxGetNaN' is invalid in C99
>> [-Wimplicit-function-declaration]
>> *la = mxGetNaN();
>> ^
>> 2 warnings generated.
>>
>>
>> MEX completed successfully.
>> mv -f lmoutr.mexmaci64 fieldtrip/src/
>> mex -O -largeArrayDims fieldtrip/src/plgndr.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f plgndr.mexmaci64 fieldtrip/src/
>> mex -O -largeArrayDims fieldtrip/src/solid_angle.c
>> fieldtrip/src/geometry.c
>> Building with 'Xcode with Clang'.
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/geometry.c:176:15:
>> warning: implicit declaration of function 'mxGetNaN' is invalid in C99
>> [-Wimplicit-function-declaration]
>> proj[0] = mxGetNaN();
>> ^
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/geometry.c:219:11:
>> warning: implicit declaration of function 'mxGetNaN' is invalid in C99
>> [-Wimplicit-function-declaration]
>> *la = mxGetNaN();
>> ^
>> 2 warnings generated.
>>
>>
>> MEX completed successfully.
>> mv -f solid_angle.mexmaci64 fieldtrip/src/
>> mex -O -largeArrayDims fieldtrip/src/routlm.c fieldtrip/src/geometry.c
>> Building with 'Xcode with Clang'.
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/geometry.c:176:15:
>> warning: implicit declaration of function 'mxGetNaN' is invalid in C99
>> [-Wimplicit-function-declaration]
>> proj[0] = mxGetNaN();
>> ^
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/geometry.c:219:11:
>> warning: implicit declaration of function 'mxGetNaN' is invalid in C99
>> [-Wimplicit-function-declaration]
>> *la = mxGetNaN();
>> ^
>> 2 warnings generated.
>>
>>
>> MEX completed successfully.
>> mv -f routlm.mexmaci64 fieldtrip/src/
>> mex -O -largeArrayDims fieldtrip/src/ltrisect.c fieldtrip/src/geometry.c
>> Building with 'Xcode with Clang'.
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/geometry.c:176:15:
>> warning: implicit declaration of function 'mxGetNaN' is invalid in C99
>> [-Wimplicit-function-declaration]
>> proj[0] = mxGetNaN();
>> ^
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/geometry.c:219:11:
>> warning: implicit declaration of function 'mxGetNaN' is invalid in C99
>> [-Wimplicit-function-declaration]
>> *la = mxGetNaN();
>> ^
>> 2 warnings generated.
>>
>>
>> MEX completed successfully.
>> mv -f ltrisect.mexmaci64 fieldtrip/src/
>> mex -O -largeArrayDims fieldtrip/src/plinproj.c fieldtrip/src/geometry.c
>> Building with 'Xcode with Clang'.
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/geometry.c:176:15:
>> warning: implicit declaration of function 'mxGetNaN' is invalid in C99
>> [-Wimplicit-function-declaration]
>> proj[0] = mxGetNaN();
>> ^
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/fieldtrip/src/geometry.c:219:11:
>> warning: implicit declaration of function 'mxGetNaN' is invalid in C99
>> [-Wimplicit-function-declaration]
>> *la = mxGetNaN();
>> ^
>> 2 warnings generated.
>>
>>
>> MEX completed successfully.
>> mv -f plinproj.mexmaci64 fieldtrip/src/
>> mex -O -largeArrayDims fieldtrip/src/splint_gh.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mv -f splint_gh.mexmaci64 fieldtrip/src/
>> _____________________________________________________________
>>
>>
>> bemcp
>> _____________________________________________________________
>>
>>
>> mex -O -largeArrayDims bem_Cii_cog.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims bem_Cii_cst.c
>> Building with 'Xcode with Clang'.
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/bemcp/bem_Cii_cst.c:89:5:
>> warning: '/*' within block comment [-Wcomment]
>> /* Distribution of the SA on the 3 vert
>> */
>> ^
>> 1 warning generated.
>>
>>
>> MEX completed successfully.
>> mex -O -largeArrayDims bem_Cii_lin.c
>> Building with 'Xcode with Clang'.
>> /Users/hamzahbaagil/Documents/MATLAB/spm12/external/bemcp/bem_Cii_lin.c:170:5:
>> warning: '/*' within block comment [-Wcomment]
>> /* Distribution of the SA on the 3 vert
>> */
>> ^
>> 1 warning generated.
>>
>>
>> MEX completed successfully.
>> mex -O -largeArrayDims bem_Cij_cog.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims bem_Cij_cst.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims bem_Cij_lin.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims bem_Gi_cog.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> mex -O -largeArrayDims bem_Gi_vert.c
>> Building with 'Xcode with Clang'.
>> MEX completed successfully.
>> -bash: b: command not found
>>
>>
>> Thank you for your help and best regards,
>> Hamzah Baagil
>>
>>
>>
>>
>>
>>
>>
>>
>>
>
>
