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Hi

You can use EDDY to estimate motion (both between-volume and within-volume) : https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/eddy

You can then use EDDY_QC to easily extract the motion parameters (plus other measures) from the output of EDDY: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/eddyqc/UsersGuide

Cheers
Saad

On 23 Oct 2019, at 07:03, Aaron C <[log in to unmask]> wrote:

Dear FSL experts,

I have a question about processing diffusion data. How could I estimate head motion from diffusion data using FSL? Thank you.




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