Print

---

Hi,

I installed FSL using synaptic, I installed the fsl-5.0-core packages,

this created a directory with the fsl utilities in / usr / bin /, in

this directory I can find the fsl programs as follows:

/usr/bin/fsl5.0-Asl

/usr/bin/fsl5.0-Bet

/usr/bin/fsl5.0-ConcatXFM

/usr/bin/fsl5.0-Fast

/usr/bin/fsl5.0-Fdt

/usr/bin/fsl5.0-Feat

.

.

.

etc

But I also have another directory: /usr/share/fsl/5.0

In this directory there is a shortcut to a bin folder that has the

following programs:

file: ///usr/share/fsl/5.0/bin/bet

file: ///usr/share/fsl/5.0/bin/Bet

file: ///usr/share/fsl/5.0/bin/checkFEAT

file: ///usr/share/fsl/5.0/bin/cluster2html

file: ///usr/share/fsl/5.0/bin/concat_bvars

file: ///usr/share/fsl/5.0/bin/ConcatXFM

file: ///usr/share/fsl/5.0/bin/design_ttest2

file: ///usr/share/fsl/5.0/bin/dual_regression

file: ///usr/share/fsl/5.0/bin/easythresh

file: ///usr/share/fsl/5.0/bin/eddy_correct

file: ///usr/share/fsl/5.0/bin/epi_reg

file: ///usr/share/fsl/5.0/bin/estnoise

file: ///usr/share/fsl/5.0/bin/extractfidparams

file: ///usr/share/fsl/5.0/bin/extracttxt

file: ///usr/share/fsl/5.0/bin/fabber_var

file: ///usr/share/fsl/5.0/bin/Fast

.

.

.

etc

in this directory the programs do not start with "fsl5.0"

In the .bashrc you will find:

FSLDIR = / usr / share / fsl / 5.0

. $ {FSLDIR} /etc/fslconf/fsl.sh

PATH = $ {FSLDIR} / bin: $ {PATH}

export FSLDIR PATH

When I try to run is the following program:

first_flirt structural structural_to_std_sub

I get:

initial registration 0

Stage 2: use subcortical mask

terminate called after throwing an instance of 'NEWMAT :: SingularException'

Aborted

Something similar happens with the following FSL programs, and I can't

do anything with FSL.

I use Debian 10.

I would appreciate any help.

Many thanks in advance,

Best,

Merlin

----------------------------------------------------------------

This message was sent using IMP, the Internet Messaging Program.

--

Este mensaje le ha llegado mediante el servicio de correo electronico que ofrece Infomed para respaldar el cumplimiento de las misiones del Sistema Nacional de Salud. La persona que envia este correo asume el compromiso de usar el servicio a tales fines y cumplir con las regulaciones establecidas

Infomed: http://www.sld.cu/

########################################################################

To unsubscribe from the FSL list, click the following link:

https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1

To unsubscribe from the FSL list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1