Dear Sudhakar,
Here are some lists of cortical and subcortical atlases:
https://en.wikibooks.org/wiki/SPM/Atlases
https://www.lead-dbs.org/helpsupport/knowledge-base/atlasesresources/cortical-atlas-parcellations-mni-space/
Have also a look at the JuBrain Anatomy Toolbox:
https://www.fz-juelich.de/inm/inm-7/EN/Resources/_doc/SPM%20Anatomy%20Toolbox_node.html
From within SPM, you can query the Neuromorphometrics atlas given a list
of coordinates:
XYZmm = [
0.5619 -9.1031 -4.7629
1.0137 -24.1197 9.3815
30.0000 -3.0000 -9.0000
-43.0914 -64.0125 36.7529
5.1065 39.6984 -23.9468
-36.5659 30.1030 31.8909
30.0947 -77.4345 -14.5599
-47.9653 -31.1684 19.9621
6.0045 5.7357 53.3664
-44.0259 -22.1028 8.9601]';
for i=1:size(XYZmm,2)
spm_atlas('query','neuromorphometrics',XYZmm(:,i))
end
ans =
'3rd Ventricle'
'CSF'
'Right vessel'
'Left AnG angular gyrus'
'Right GRe gyrus rectus'
'Left MFG middle frontal gyrus'
'Right OFuG occipital fusiform gyrus'
'Left PO parietal operculum'
'Right SMC supplementary motor cortex'
'Left Cerebral White Matter'
Best regards,
Guillaume.
On 04/09/2019 04:58, sudhakar Mishra wrote:
> Hi SPM,
>
> I am looking for any database with python API or excel sheets which has
> description about the regions along with its coordinates. I have a long
> list of coordinates and putting these coordinates one by one in any
> online tool to get the region is not feasible.
>
> If information about the database API or excel sheet is available with
> anyone please share with me.
>
> Thanks
>
> Best,
> Sudhakar Mishra
> Research Scholar
>
--
Guillaume Flandin, PhD
Wellcome Centre for Human Neuroimaging
UCL Queen Square Institute of Neurology
London WC1N 3BG