After inspecting the outputs,

I guess I should use the template_4D_GM after applying a sigma value.

If I am wrong, I would greatly appreciate your correction.

Regards,
Rosalia

On Sat, Aug 10, 2019 at 8:12 PM Rosalia Dacosta Aguayo <[log in to unmask]> wrote:
Dear FSL experts,

After running FSLVBM, it is the first time that the GM_mod_merg has not been generated.

I wonder if something has changed in the new FSL version I am using: 6.0.0

The only files I have are:

/home/rosalia/Desktop/MS_ftg_VBM_MORE/VBM/struc/template_4D_GM.nii.gz
/home/rosalia/Desktop/MS_ftg_VBM_MORE/VBM/struc/template_GM.nii.gz
/home/rosalia/Desktop/MS_ftg_VBM_MORE/VBM/struc/template_GM_flipped.nii.gz
/home/rosalia/Desktop/MS_ftg_VBM_MORE/VBM/struc/template_GM_init.nii.gz

Thank you,
Rosalia

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