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Hi Ishi, This might be due to an incomplete FSL installation. What happens when you type "imglob" (without the quotes) into a terminal? Paul On 24/07/2019, Ishi Tandon <[log in to unmask]> wrote: > It said creating common masks, running randomise and done dual regression. > Only three outputs were generated corresponding to it. Total time taken was > nearly 3 mins. > *Regards,* > > *Ishi Tandon* > *B.tech + M.tech - Cognitive & Neuroscience* > *Amity University, Rajasthan* > *contact - +918239259846 ; Email- [log in to unmask] > <[log in to unmask]>* > > > On Wed, Jul 24, 2019 at 1:07 PM paul mccarthy <[log in to unmask]> > wrote: > >> Hi Ishi, >> >> By "output", I mean what was printed to the terminal when you called >> the dual_regression script. >> >> Paul >> >> On 24/07/2019, Ishi Tandon <[log in to unmask]> wrote: >> > Following is the output directory that is generated. This is all in the >> > folder called grot. >> > >> > On Tue, Jul 23, 2019 at 1:44 PM paul mccarthy <[log in to unmask]> >> > wrote: >> > >> >> Hi Ishi, >> >> >> >> Do you get *any* output at all when you run dual regression? >> >> >> >> Paul >> >> >> >> On 23/07/2019, Ishi Tandon <[log in to unmask]> wrote: >> >> > I don't get any errors on the terminal while i run dual regression. >> But >> >> in >> >> > the grot folder dr_stage files ain't formed. >> >> > >> >> > On Mon, Jul 22, 2019 at 9:31 PM Ishi Tandon >> >> > <[log in to unmask]> >> >> > wrote: >> >> > >> >> >> Yes you can run dual regression. Do share the output. >> >> >> How can I use dual regression to obtain the time courses of each >> >> subject? >> >> >> I tried to view the time courses through FSLeyes and they were >> >> >> visible. >> >> I >> >> >> had big doubt regarding group ICA time series, thanks for clearing >> >> >> it >> >> >> out. >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> On Mon, Jul 22, 2019 at 9:08 PM paul mccarthy >> >> >> <[log in to unmask]> >> >> >> wrote: >> >> >> >> >> >>> Hi Ishi, >> >> >>> >> >> >>> Your group ICA results look fine; the time series and power >> >> >>> spectra >> >> >>> plots are no longer generated as part of a group ICA report, >> >> >>> because >> >> >>> group ICA uses an optimisation technique called MIGP which causes >> the >> >> >>> mixing matrix to no longer reflect the underlying component time >> >> >>> courses. Instead, you can use dual regression to get the time >> courses >> >> >>> for each subject. >> >> >>> >> >> >>> I can run dual regression on your data without any problem at all >> >> >>> - >> >> >>> what was output to the terminal when you ran it? >> >> >>> >> >> >>> Cheers, >> >> >>> >> >> >>> Paul >> >> >>> >> >> >>> On 22/07/2019, Ishi Tandon <[log in to unmask]> wrote: >> >> >>> > Hi There, >> >> >>> > Somehow OxFile was taking longer time than usual. Here are the >> >> >>> > Google >> >> >>> Drive >> >> >>> > links. This is the test data for 5 subjects. The same issue >> >> >>> > persists. >> >> >>> > >> >> >>> >> >> >> https://drive.google.com/file/d/1A0RfmJhqktRJ1TUadxE9VFv_ajP_62RW/view?usp=sharing >> >> >>> > >> >> >>> > >> >> >>> > >> >> >>> > On Mon, Jul 22, 2019 at 7:56 AM Ishi Tandon >> >> >>> > <[log in to unmask] >> >> > >> >> >>> > wrote: >> >> >>> > >> >> >>> >> Sure i will do that in a while. >> >> >>> >> *Regards,* >> >> >>> >> >> >> >>> >> *Ishi Tandon* >> >> >>> >> *B.tech + M.tech - Cognitive & Neuroscience* >> >> >>> >> *Amity University, Rajasthan* >> >> >>> >> *contact - +918239259846 ; Email- [log in to unmask] >> >> >>> >> <[log in to unmask]>* >> >> >>> >> >> >> >>> >> >> >> >>> >> On Mon, Jul 22, 2019 at 1:18 PM paul mccarthy >> >> >>> >> <[log in to unmask] >> >> >>> > >> >> >>> >> wrote: >> >> >>> >> >> >> >>> >>> Hi Ishi, >> >> >>> >>> >> >> >>> >>> Would you be able to zip up the contents of your melodic and >> dual >> >> >>> >>> regression output directories and upload them to: >> >> >>> >>> >> >> >>> >>> >> https://oxfile.ox.ac.uk/oxfile/work/extBox?id=7594581385A6E05F08 >> >> >>> >>> >> >> >>> >>> so I can take a look? >> >> >>> >>> >> >> >>> >>> Paul >> >> >>> >>> >> >> >>> >>> On 21/07/2019, Ishi Tandon <[log in to unmask]> wrote: >> >> >>> >>> > There were no errors or warnings displayed by either >> >> >>> >>> > >> >> >>> >>> > On Sun, Jul 21, 2019 at 5:32 PM paul mccarthy >> >> >>> >>> > <[log in to unmask]> >> >> >>> >>> > wrote: >> >> >>> >>> > >> >> >>> >>> >> Hi Ishi, >> >> >>> >>> >> >> >> >>> >>> >> Were any errors or warnings output by melodic or >> >> dual_regression? >> >> >>> >>> >> >> >> >>> >>> >> Paul >> >> >>> >>> >> >> >> >>> >>> >> On 21/07/2019, Ishi Tandon <[log in to unmask]> wrote: >> >> >>> >>> >> > Hi there >> >> >>> >>> >> > After running group Ica on 64 subject’s resting fmri >> >> >>> >>> >> > data, >> >> >>> >>> >> > I >> >> >>> >>> >> > didn’t >> >> >>> >>> >> > get >> >> >>> >>> >> the >> >> >>> >>> >> > power spectra and BOLD plots below the components in the >> >> >>> >>> >> > report. >> >> >>> >>> After >> >> >>> >>> >> > running dual regression dr_stage_1, 2 and 3 files were >> >> >>> >>> >> > not >> >> >>> formed. >> >> >>> >>> >> > I am using FSL version 6.0.1. The same problem persisted >> >> >>> >>> >> > in >> >> >>> >>> >> > both >> >> >>> >>> ubuntu >> >> >>> >>> >> > 18.04 and macOS 10.14.5 Mojave. >> >> >>> >>> >> > Why is that happening? >> >> >>> >>> >> > >> >> >>> >>> >> > >> >> >>> >>> >> >> >>> >> >> ######################################################################## >> >> >>> >>> >> > >> >> >>> >>> >> > To unsubscribe from the FSL list, click the following >> >> >>> >>> >> > link: >> >> >>> >>> >> > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 >> >> >>> >>> >> > >> >> >>> >>> >> >> >> >>> >>> >> >> >> >>> >>> >> >> >>> >> >> ######################################################################## >> >> >>> >>> >> >> >> >>> >>> >> To unsubscribe from the FSL list, click the following link: >> >> >>> >>> >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 >> >> >>> >>> >> >> >> >>> >>> > >> >> >>> >>> > >> >> >>> >> >> ######################################################################## >> >> >>> >>> > >> >> >>> >>> > To unsubscribe from the FSL list, click the following link: >> >> >>> >>> > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 >> >> >>> >>> > >> >> >>> >>> >> >> >>> >>> >> >> >>> >> >> ######################################################################## >> >> >>> >>> >> >> >>> >>> To unsubscribe from the FSL list, click the following link: >> >> >>> >>> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 >> >> >>> >>> >> >> >>> >> >> >> >>> > >> >> >>> > >> >> ######################################################################## >> >> >>> > >> >> >>> > To unsubscribe from the FSL list, click the following link: >> >> >>> > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 >> >> >>> > >> >> >>> >> >> >>> >> >> ######################################################################## >> >> >>> >> >> >>> To unsubscribe from the FSL list, click the following link: >> >> >>> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 >> >> >>> >> >> >> >> >> > >> >> > >> ######################################################################## >> >> > >> >> > To unsubscribe from the FSL list, click the following link: >> >> > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 >> >> > >> >> >> >> ######################################################################## >> >> >> >> To unsubscribe from the FSL list, click the following link: >> >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 >> >> >> > >> > ######################################################################## >> > >> > To unsubscribe from the FSL list, click the following link: >> > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 >> > >> >> ######################################################################## >> >> To unsubscribe from the FSL list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 >> > > ######################################################################## > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1