Hi Ishi,

By "output", I mean what was printed to the terminal when you called
the dual_regression script.

Paul

On 24/07/2019, Ishi Tandon <[log in to unmask]> wrote:
> Following is the output directory that is generated. This is all in the
> folder called grot.
>
> On Tue, Jul 23, 2019 at 1:44 PM paul mccarthy <[log in to unmask]>
> wrote:
>
>> Hi Ishi,
>>
>> Do you get *any* output at all when you run dual regression?
>>
>> Paul
>>
>> On 23/07/2019, Ishi Tandon <[log in to unmask]> wrote:
>> > I don't get any errors on the terminal while i run dual regression. But
>> in
>> > the grot folder dr_stage files ain't formed.
>> >
>> > On Mon, Jul 22, 2019 at 9:31 PM Ishi Tandon <[log in to unmask]>
>> > wrote:
>> >
>> >> Yes you can run dual regression. Do share the output.
>> >> How can I use dual regression to obtain the time courses of each
>> subject?
>> >> I tried to view the time courses through FSLeyes and they were
>> >> visible.
>> I
>> >> had big doubt regarding group ICA time series, thanks for clearing it
>> >> out.
>> >>
>> >>
>> >>
>> >>
>> >> On Mon, Jul 22, 2019 at 9:08 PM paul mccarthy
>> >> <[log in to unmask]>
>> >> wrote:
>> >>
>> >>> Hi Ishi,
>> >>>
>> >>> Your group ICA results look fine; the time series and power spectra
>> >>> plots are no longer generated as part of a group ICA report, because
>> >>> group ICA uses an optimisation technique called MIGP which causes the
>> >>> mixing matrix to no longer reflect the underlying component time
>> >>> courses. Instead, you can use dual regression to get the time courses
>> >>> for each subject.
>> >>>
>> >>> I can run dual regression on your data without any problem at all -
>> >>> what was output to the terminal when you ran it?
>> >>>
>> >>> Cheers,
>> >>>
>> >>> Paul
>> >>>
>> >>> On 22/07/2019, Ishi Tandon <[log in to unmask]> wrote:
>> >>> > Hi There,
>> >>> > Somehow OxFile was taking longer time than usual. Here are the
>> >>> > Google
>> >>> Drive
>> >>> > links. This is the test data for 5 subjects. The same issue
>> >>> > persists.
>> >>> >
>> >>>
>> https://drive.google.com/file/d/1A0RfmJhqktRJ1TUadxE9VFv_ajP_62RW/view?usp=sharing
>> >>> >
>> >>> >
>> >>> >
>> >>> > On Mon, Jul 22, 2019 at 7:56 AM Ishi Tandon
>> >>> > <[log in to unmask]
>> >
>> >>> > wrote:
>> >>> >
>> >>> >> Sure i will do that in a while.
>> >>> >> *Regards,*
>> >>> >>
>> >>> >> *Ishi Tandon*
>> >>> >> *B.tech + M.tech - Cognitive & Neuroscience*
>> >>> >> *Amity University, Rajasthan*
>> >>> >> *contact - +918239259846 ; Email- [log in to unmask]
>> >>> >> <[log in to unmask]>*
>> >>> >>
>> >>> >>
>> >>> >> On Mon, Jul 22, 2019 at 1:18 PM paul mccarthy
>> >>> >> <[log in to unmask]
>> >>> >
>> >>> >> wrote:
>> >>> >>
>> >>> >>> Hi Ishi,
>> >>> >>>
>> >>> >>> Would you be able to zip up the contents of your melodic and dual
>> >>> >>> regression output directories and upload them to:
>> >>> >>>
>> >>> >>> https://oxfile.ox.ac.uk/oxfile/work/extBox?id=7594581385A6E05F08
>> >>> >>>
>> >>> >>> so I can take a look?
>> >>> >>>
>> >>> >>> Paul
>> >>> >>>
>> >>> >>> On 21/07/2019, Ishi Tandon <[log in to unmask]> wrote:
>> >>> >>> > There were no errors or warnings displayed by either
>> >>> >>> >
>> >>> >>> > On Sun, Jul 21, 2019 at 5:32 PM paul mccarthy
>> >>> >>> > <[log in to unmask]>
>> >>> >>> > wrote:
>> >>> >>> >
>> >>> >>> >> Hi Ishi,
>> >>> >>> >>
>> >>> >>> >> Were any errors or warnings output by melodic or
>> dual_regression?
>> >>> >>> >>
>> >>> >>> >> Paul
>> >>> >>> >>
>> >>> >>> >> On 21/07/2019, Ishi Tandon <[log in to unmask]> wrote:
>> >>> >>> >> > Hi there
>> >>> >>> >> > After running group Ica on  64 subject’s resting fmri data,
>> >>> >>> >> > I
>> >>> >>> >> > didn’t
>> >>> >>> >> > get
>> >>> >>> >> the
>> >>> >>> >> > power spectra and BOLD plots below the components in the
>> >>> >>> >> > report.
>> >>> >>> After
>> >>> >>> >> > running dual regression dr_stage_1, 2 and 3 files were not
>> >>> formed.
>> >>> >>> >> > I am using FSL version 6.0.1. The same problem persisted in
>> >>> >>> >> > both
>> >>> >>> ubuntu
>> >>> >>> >> > 18.04 and macOS 10.14.5 Mojave.
>> >>> >>> >> > Why is that happening?
>> >>> >>> >> >
>> >>> >>> >> >
>> >>> >>>
>> >>>
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