 |
 |
It said creating common masks, running randomise and done dual regression. Only three outputs were generated corresponding to it. Total time taken was nearly 3 mins. *Regards,* *Ishi Tandon* *B.tech + M.tech - Cognitive & Neuroscience* *Amity University, Rajasthan* *contact - +918239259846 ; Email- [log in to unmask] <[log in to unmask]>* On Wed, Jul 24, 2019 at 1:07 PM paul mccarthy <[log in to unmask]> wrote: > Hi Ishi, > > By "output", I mean what was printed to the terminal when you called > the dual_regression script. > > Paul > > On 24/07/2019, Ishi Tandon <[log in to unmask]> wrote: > > Following is the output directory that is generated. This is all in the > > folder called grot. > > > > On Tue, Jul 23, 2019 at 1:44 PM paul mccarthy <[log in to unmask]> > > wrote: > > > >> Hi Ishi, > >> > >> Do you get *any* output at all when you run dual regression? > >> > >> Paul > >> > >> On 23/07/2019, Ishi Tandon <[log in to unmask]> wrote: > >> > I don't get any errors on the terminal while i run dual regression. > But > >> in > >> > the grot folder dr_stage files ain't formed. > >> > > >> > On Mon, Jul 22, 2019 at 9:31 PM Ishi Tandon <[log in to unmask]> > >> > wrote: > >> > > >> >> Yes you can run dual regression. Do share the output. > >> >> How can I use dual regression to obtain the time courses of each > >> subject? > >> >> I tried to view the time courses through FSLeyes and they were > >> >> visible. > >> I > >> >> had big doubt regarding group ICA time series, thanks for clearing it > >> >> out. > >> >> > >> >> > >> >> > >> >> > >> >> On Mon, Jul 22, 2019 at 9:08 PM paul mccarthy > >> >> <[log in to unmask]> > >> >> wrote: > >> >> > >> >>> Hi Ishi, > >> >>> > >> >>> Your group ICA results look fine; the time series and power spectra > >> >>> plots are no longer generated as part of a group ICA report, because > >> >>> group ICA uses an optimisation technique called MIGP which causes > the > >> >>> mixing matrix to no longer reflect the underlying component time > >> >>> courses. Instead, you can use dual regression to get the time > courses > >> >>> for each subject. > >> >>> > >> >>> I can run dual regression on your data without any problem at all - > >> >>> what was output to the terminal when you ran it? > >> >>> > >> >>> Cheers, > >> >>> > >> >>> Paul > >> >>> > >> >>> On 22/07/2019, Ishi Tandon <[log in to unmask]> wrote: > >> >>> > Hi There, > >> >>> > Somehow OxFile was taking longer time than usual. Here are the > >> >>> > Google > >> >>> Drive > >> >>> > links. This is the test data for 5 subjects. The same issue > >> >>> > persists. > >> >>> > > >> >>> > >> > https://drive.google.com/file/d/1A0RfmJhqktRJ1TUadxE9VFv_ajP_62RW/view?usp=sharing > >> >>> > > >> >>> > > >> >>> > > >> >>> > On Mon, Jul 22, 2019 at 7:56 AM Ishi Tandon > >> >>> > <[log in to unmask] > >> > > >> >>> > wrote: > >> >>> > > >> >>> >> Sure i will do that in a while. > >> >>> >> *Regards,* > >> >>> >> > >> >>> >> *Ishi Tandon* > >> >>> >> *B.tech + M.tech - Cognitive & Neuroscience* > >> >>> >> *Amity University, Rajasthan* > >> >>> >> *contact - +918239259846 ; Email- [log in to unmask] > >> >>> >> <[log in to unmask]>* > >> >>> >> > >> >>> >> > >> >>> >> On Mon, Jul 22, 2019 at 1:18 PM paul mccarthy > >> >>> >> <[log in to unmask] > >> >>> > > >> >>> >> wrote: > >> >>> >> > >> >>> >>> Hi Ishi, > >> >>> >>> > >> >>> >>> Would you be able to zip up the contents of your melodic and > dual > >> >>> >>> regression output directories and upload them to: > >> >>> >>> > >> >>> >>> > https://oxfile.ox.ac.uk/oxfile/work/extBox?id=7594581385A6E05F08 > >> >>> >>> > >> >>> >>> so I can take a look? > >> >>> >>> > >> >>> >>> Paul > >> >>> >>> > >> >>> >>> On 21/07/2019, Ishi Tandon <[log in to unmask]> wrote: > >> >>> >>> > There were no errors or warnings displayed by either > >> >>> >>> > > >> >>> >>> > On Sun, Jul 21, 2019 at 5:32 PM paul mccarthy > >> >>> >>> > <[log in to unmask]> > >> >>> >>> > wrote: > >> >>> >>> > > >> >>> >>> >> Hi Ishi, > >> >>> >>> >> > >> >>> >>> >> Were any errors or warnings output by melodic or > >> dual_regression? > >> >>> >>> >> > >> >>> >>> >> Paul > >> >>> >>> >> > >> >>> >>> >> On 21/07/2019, Ishi Tandon <[log in to unmask]> wrote: > >> >>> >>> >> > Hi there > >> >>> >>> >> > After running group Ica on 64 subject’s resting fmri data, > >> >>> >>> >> > I > >> >>> >>> >> > didn’t > >> >>> >>> >> > get > >> >>> >>> >> the > >> >>> >>> >> > power spectra and BOLD plots below the components in the > >> >>> >>> >> > report. > >> >>> >>> After > >> >>> >>> >> > running dual regression dr_stage_1, 2 and 3 files were not > >> >>> formed. > >> >>> >>> >> > I am using FSL version 6.0.1. The same problem persisted in > >> >>> >>> >> > both > >> >>> >>> ubuntu > >> >>> >>> >> > 18.04 and macOS 10.14.5 Mojave. > >> >>> >>> >> > Why is that happening? > >> >>> >>> >> > > >> >>> >>> >> > > >> >>> >>> > >> >>> > >> ######################################################################## > >> >>> >>> >> > > >> >>> >>> >> > To unsubscribe from the FSL list, click the following link: > >> >>> >>> >> > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > >> >>> >>> >> > > >> >>> >>> >> > >> >>> >>> >> > >> >>> >>> > >> >>> > >> ######################################################################## > >> >>> >>> >> > >> >>> >>> >> To unsubscribe from the FSL list, click the following link: > >> >>> >>> >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > >> >>> >>> >> > >> >>> >>> > > >> >>> >>> > > >> >>> > >> ######################################################################## > >> >>> >>> > > >> >>> >>> > To unsubscribe from the FSL list, click the following link: > >> >>> >>> > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > >> >>> >>> > > >> >>> >>> > >> >>> >>> > >> >>> > >> ######################################################################## > >> >>> >>> > >> >>> >>> To unsubscribe from the FSL list, click the following link: > >> >>> >>> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > >> >>> >>> > >> >>> >> > >> >>> > > >> >>> > > >> ######################################################################## > >> >>> > > >> >>> > To unsubscribe from the FSL list, click the following link: > >> >>> > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > >> >>> > > >> >>> > >> >>> > >> ######################################################################## > >> >>> > >> >>> To unsubscribe from the FSL list, click the following link: > >> >>> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > >> >>> > >> >> > >> > > >> > > ######################################################################## > >> > > >> > To unsubscribe from the FSL list, click the following link: > >> > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > >> > > >> > >> ######################################################################## > >> > >> To unsubscribe from the FSL list, click the following link: > >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > >> > > > > ######################################################################## > > > > To unsubscribe from the FSL list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > > > > ######################################################################## > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1