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Hi Peter, This stackoverflow post: https://stackoverflow.com/questions/53807511/pip-cannot-uninstall-package-it-is-a-distutils-installed-project suggests that this is an OS-managed python installation. So you might need to install all of these dependencies via yum. This is one of the most frustrating things about Python - working with multiple installations and environments. You may wish to invest in learning about virtualenv or, possibly preferably, look at using miniconda: - https://conda.io/en/latest/miniconda.html - https://virtualenv.pypa.io/en/latest/ *Or* if you have FSL >= 5.0.10 installed, you can use the miniconda environment that comes bundled with it. For example, to create a separate python 2 environment for ICA-AROMA (change the path to a suitable location on your system): $FSLDIR/fslpython/bin/conda create -p /path/to/ica-aroma/environment/ python=2.7 To activate this environment: source $FSLDIR/fslpython/bin/activate /path/to/ica-aroma/environment/ Then you can "pip install" or "conda install" all of the ICA-aroma dependencies into that environment. Cheers, Paul On 23/07/2019, Peter van Ruitenbeek <[log in to unmask]> wrote: > Dear Paul, > > I'm afraid I get the same message. > > Now, I've done a full check of all required packages. > First, running python2.7 -m pip -r requirements.txt from the ICA-AROMA > directory returns several times that matplotlib already satisfies the > requirements. It then attempts to install pyparsing, numpy, kiwisolver, > matplotlib, pandas, seaborn, but it gives an error at pyparsing (see below) > > Requirement already satisfied: future in /usr/lib/python2.7/site-packages > (from -r requirements.txt (line 1)) (0.17.1) > Collecting matplotlib==2.2 (from -r requirements.txt (line 2)) > Using cached > https://files.pythonhosted.org/packages/d5/6c/05d5ee9970d195be42af9c8ed0211e7193233930111cc0d8687a7f3d5f29/matplotlib-2.2.0-cp27-cp27mu-manylinux1_x86_64.whl > Collecting numpy==1.14 (from -r requirements.txt (line 3)) > Using cached > https://files.pythonhosted.org/packages/0d/8a/e0223a40f980e0442a2045dcf79e4a8a90339593525599a0add318da2428/numpy-1.14.0-cp27-cp27mu-manylinux1_x86_64.whl > Collecting pandas==0.23 (from -r requirements.txt (line 4)) > Using cached > https://files.pythonhosted.org/packages/76/fa/3bb6b95bf389762c7690ffba2250b6a8a1cbcc321f8cfb864116c98df831/pandas-0.23.0-cp27-cp27mu-manylinux1_x86_64.whl > Collecting seaborn==0.8 (from -r requirements.txt (line 5)) > Using cached > https://files.pythonhosted.org/packages/d6/13/dd3da2cd6e03e522bbd389735d3adcb47d7a4470a968ebc3348fbac8eddd/seaborn-0.8.tar.gz > Requirement already satisfied: python-dateutil>=2.1 in > /usr/lib/python2.7/site-packages (from matplotlib==2.2->-r requirements.txt > (line 2)) (2.8.0) > Requirement already satisfied: subprocess32 in > /usr/lib64/python2.7/site-packages (from matplotlib==2.2->-r > requirements.txt (line 2)) (3.2.6) > Requirement already satisfied: cycler>=0.10 in > /usr/lib/python2.7/site-packages (from matplotlib==2.2->-r requirements.txt > (line 2)) (0.10.0) > Requirement already satisfied: six>=1.10 in /usr/lib/python2.7/site-packages > (from matplotlib==2.2->-r requirements.txt (line 2)) (1.12.0) > Requirement already satisfied: backports.functools-lru-cache in > /usr/lib/python2.7/site-packages (from matplotlib==2.2->-r requirements.txt > (line 2)) (1.5) > Requirement already satisfied: pytz in /usr/lib/python2.7/site-packages > (from matplotlib==2.2->-r requirements.txt (line 2)) (2016.10) > Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 (from > matplotlib==2.2->-r requirements.txt (line 2)) > Using cached > https://files.pythonhosted.org/packages/9f/dc/b205465a60baca8e04a1555a84d9c79f910661765056f071fb6fc2db4841/pyparsing-2.4.1-py2.py3-none-any.whl > Collecting kiwisolver>=1.0.1 (from matplotlib==2.2->-r requirements.txt > (line 2)) > Using cached > https://files.pythonhosted.org/packages/3d/78/cb9248b2289ec31e301137cedbe4ca503a74ca87f88cdbfd2f8be52323bf/kiwisolver-1.1.0-cp27-cp27mu-manylinux1_x86_64.whl > Requirement already satisfied: setuptools in > /usr/lib/python2.7/site-packages (from > kiwisolver>=1.0.1->matplotlib==2.2->-r requirements.txt (line 2)) (0.9.8) > Installing collected packages: pyparsing, numpy, kiwisolver, matplotlib, > pandas, seaborn > Found existing installation: pyparsing 1.5.6 > ERROR: Cannot uninstall 'pyparsing'. It is a distutils installed project and > thus we cannot accurately determine which files belong to it which would > lead to only a partial uninstall. > > Perhaps this is where is goes wrong? > > Cheers, Peter > > ######################################################################## > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1