Dear Jordi,
I hope that it will be finished in the next 2-3 weeks.
Best,
Christian
On 17 Jun 2019, at 11:47, Jordi Huguet wrote:
> Dear Christian,
>
> I see, what a pity. Do you have an approximate date or time-frame for
> the
> release of such new version?
>
> Many thanks,
> Jordi
>
> On Mon, Jun 17, 2019 at 8:35 AM Christian Gaser
> <[log in to unmask]>
> wrote:
>
>> Dear Jordi,
>>
>> the use of the batch shell scripts is not yet supported in the
>> deployed
>> (compiled) version of CAT12.m This will be added in the next release.
>>
>> Best,
>>
>> Christian
>>
>> On Sat, 15 Jun 2019 17:02:30 +0200, Jordi Huguet <[log in to unmask]>
>> wrote:
>>
>>> Jordi Huguet <[log in to unmask]>
>>> 4:58 PM (3 minutes ago)
>>> to SPM
>>> Dear all,
>>>
>>> I am trying to run CAT12 toolbox (r1450) in a HPC environment using
>>> the
>>> standalone SPM version (SPM12 r7478) for Matlab MCR R2018b.
>>> However, my first attempt at running it for segmenting a single
>>> image (via
>>> 'cat_batch_cat.sh' script) did not succeed. See log file content
>>> below:
>>>
>>> ----------------------------------
>>>> Sat Jun 15 16:16:36 CEST 2019
>>>> ----------------------------------
>>>> Calling string of this batch:
>>>> /opt/packages/spm/12-r7487/spm12_mcr/toolbox/cat12/cat_batch_cat.sh
>> -fg
>>>> -nojvm -nojvm -m -m spm12 /home/jhuguet/scratch/cat12/INPUT/mri.nii
>>>> MATLAB command of this batch:
>>>> cat_batch_cat('/tmp/cat_185160','')
>>>> Shell command of this batch:
>>>> /home/jhuguet/scratch/cat12/INPUT/mri.nii
>>>> nohup: ignoring input
>>>> Error using spm_cli (line 56)
>>>> Cannot find module -nodisplay.
>>>> Error in spm_cli (line 56)
>>>> Error in spm_standalone (line 157)
>>>
>>>
>>> Any ideas of what am I missing or doing wrong?
>>>
>>> Many thanks,
>>> Jordi
>>>
>>
>>
>>
