flirt -in DTI.nii.gz -ref reference_DTI.nii.gz -o DTI_resampled.nii.gz -applyxfm
Now that I use fslinfo to look at the DTI_resampled.nii.gz, the dimensions are 100*100*74*1225.
How can I ensure that I have 35 volumes rather than 1225.
Thanks,
Sara
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