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Dear Melanni, Have you tried fslswapdim with the -copysform2qform or -copyqform2sform options to restore whichever transform has changed to it’s original value? Kind Regards Matthew -------------------------------- Dr Matthew Webster FMRIB Centre John Radcliffe Hospital University of Oxford > On 21 Jun 2019, at 17:31, melanni nanni <[log in to unmask]> wrote: > > Dear experts, > > I'm working with some functional images, that I got after run gRAICAR (a toolbox for melodic reproducibility). For some reason the resultant functional components has an inconsistant order acording to fslhd: > > qform_xorient Left-to-Right > qform_yorient Posterior-to-Anterior > qform_zorient Superior-to-Inferior > .. > sform_xorient Left-to-Right > sform_yorient Posterior-to-Anterior > sform_zorient Inferior-to-Superior > > Therefore any manipulation that I want to perform on these images (fslmaths, etc) I get the following error: > ERROR: Inconsistent left-right order stored in sform and qform in file comp001 Using sform instead of qform values > > Even after use fslorient -swapdim or fslswapdim, I get the same error. How can I change the order? > Thank you > > Melanni > > > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1