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Thank you! You have saved me again Mark! Your suggestion works well for me and the mask coordinates are matched exactly in FSL and SPM space. Wonderful! -Dianne On Fri, Jun 21, 2019 at 1:47 AM Mark Jenkinson <[log in to unmask]> wrote: > Hi Dianne, > > The following should do what you want: > > flirt -in my_spm_image -ref /usr/local/fsl/data/standard/MNI152_T1_1mm > -applyxfm -usesqform -noresampblur -interp nearestneighbour -out > resized_spm_image > > This should assign the correct mm coordinates for all anatomical > locations, but please check that, just to be sure. > > All the best, > Mark > > > On 21 Jun 2019, at 03:15, Dianne Patterson <[log in to unmask]> wrote: > > Dear FSL experts, > > I have mask images in 1mm MNI space created with SPM12: 181x217x181 > I want to convert them to FSL MNI 1mm space 182x218x182 with minimal > change. > I've been fooling with flirt and applyxfm and DOF of 12 or 6, but I am not > happy with the results. > > Can you please advise on the least destructive way to do this such that > transforming to FSL space and then back to SPM12 space results in no > shifting? > > I must be missing something. > > Thanks for your help. > > -Dianne > > -- > Dianne Patterson, Ph.D. > Research Scientist > [log in to unmask] <[log in to unmask]> > or > [log in to unmask] > University of Arizona > Speech and Hearing Science 314 > 1131 E 2nd Street, Building #71 > (Just East of Harvill) > ============== > If you don't hear back from me (and you expected to), > I blame the University's new SPAM filter. > Please write to my gmail account. > ============== > Antipiphany: That moment when you realize how little you actually know > ============== > > ------------------------------ > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > > > > ------------------------------ > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > -- Dianne Patterson, Ph.D. Research Scientist [log in to unmask] <[log in to unmask]> or [log in to unmask] University of Arizona Speech and Hearing Science 314 1131 E 2nd Street, Building #71 (Just East of Harvill) ============== If you don't hear back from me (and you expected to), I blame the University's new SPAM filter. Please write to my gmail account. ============== Antipiphany: That moment when you realize how little you actually know ============== ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1