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Hi Deniz,
yes you can do that, though I don't know right now how B-factors are taken
into account when refining occupancies.
Anyway, in i2 you have to go to the advanced tab. There is a  place to put
keywords in (text area). There you put the right combination of keywords
for your special cases. Regarding syntax, please look here.

http://www.ysbl.york.ac.uk/refmac/data/refmac_keywords.html#Occupancy

Hope you find the right combination of keywords and it will work out for you

Cheers

Christian

On Mon, Jun 24, 2019 at 10:57 PM "Deniz Üresin" <[log in to unmask]>
wrote:

> Hello,
> when I add an alternative conformation of a residue in COOT, I have to set
> the occupancy of both conformers, but Refmac5 won't touch these numbers.
> Can I tell Refmac to check for the best fitting occupancies (in the Windows
> version of CCP4i2)?
>
> With kind regards,
> Deniz Üresin
>
> Institute for Biophysics
> Goethe-University Frankfurt
> Max-von-Laue-Straße 1
> 60438 Frankfurt/Main
>
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