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A classic case of this is crambin.  Residue 25 of 3nir.

-James Holton
MAD Scientist

On 6/24/2019 1:00 AM, Guenter Fritz wrote:
> Dear all,
>
> I am refining a multimer and mass spec data of the sample indicate 
> that there is a mixture of two variants which differ in one amino acid 
> residue. The density that we see is therefore most likely an average 
> of both variants. I have created a pdb file with "alternate residues" 
> each with 0.5 occupancy at this position to use it in refinement.  
> However, the programs detect this as an error in the pdb file.
>
> Has anyone  faced such a problem previously? Any suggestions are very 
> much appreciated.
>
> Thanks a lot and best regards, Guenter
>
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