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Hi Shijun,

Yes there are differences in Ramachandran validation implementations. Just look at where your supposed outlier lies on the Ramachandran plot. If it is close to the edge of the distribution, I wouldn't worry about it.

Cheers,
Robbie

> -----Original Message-----
> From: CCP4 bulletin board [mailto:[log in to unmask]] On Behalf Of
> ???
> Sent: Thursday, June 20, 2019 10:24
> To: [log in to unmask]
> Subject: [ccp4bb] RAMACHANDRAN outlier of Thr
> 
> Dear all
> 
>  The problem is when I check RAMACHANDRAN outlier with coot, it shows
> zero, while it become one Thr outlier in phenix.vadition. so I am confusing
> about the standard of RAMACHANDRAN outlier in coot and
> phenix.validation, any difference between them? Thanks
> 
> yours
> 
> shijun
> 
> 
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