 |
 |
Hi, We don’t have any specific tools to remove the nose and eyes but you could do this by registration of a whole-head image to the MNI template and then take a mask from the MNI space that covers the nose and eyes into the original image space and then use that to remove these. I hope that helps. All the best, Mark On 25 May 2019, at 15:57, Yi Fung <[log in to unmask]<mailto:[log in to unmask]>> wrote: This is the image of the nose-stripping that I want to perform, previously didn't go through due to the file size limit of the email. Thanks! <brainMRI.png> On Sat, May 25, 2019 at 9:53 AM Glasser, Matthew <[log in to unmask]<mailto:[log in to unmask]>> wrote: No image was attached. Matt. From: FSL - FMRIB's Software Library <[log in to unmask]<mailto:[log in to unmask]>> on behalf of Yi Fung <[log in to unmask]<mailto:[log in to unmask]>> Reply-To: FSL - FMRIB's Software Library <[log in to unmask]<mailto:[log in to unmask]>> Date: Saturday, May 25, 2019 at 8:42 AM To: "[log in to unmask]<mailto:[log in to unmask]>" <[log in to unmask]<mailto:[log in to unmask]>> Subject: [FSL] FSL Initial Preprocessing Question Hi FSL Listserv Community, I came across a question on the FSL preprocessing pipeline. I would like to know how I can remove redundant tissues such as the eyes and nosein the brain MRI before running BET on it, as in the attached images. I am only aware of the robustfov procedure which removes the neck, not the nose. Thanks for pointers and suggestions! Sincerely, Yi Fung ________________________________ To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ________________________________ To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 ________________________________ To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1