Dear all,
I also take this mail to announce the release of Xmipp 19.04. It's release notes are in https://github.com/I2PC/xmipp/wiki/Release-notes and this new version contains many new algorithms like stream processing up to 3D reconstruction and estimation of 3D heterogeneity, MotionCorrB (a very fast movie alignment using B-splines that generalizes MotionCorr2 and our Optical Flow), deep consensus (an algorithm to merge the output of multiple particle pickers and save 2D classification time), swarm consensus (an algorithm that automatically constructs initial volumes based on proposals by other algorithms), initial volume validation using SAXS experiments, highres (3D reconstruction of homogeneous populations), angular consensus (an algorithm to compare the angular assignment by two different algorithms), heterogeneity metaprotocol (3D classification) allowing detailed control of the intermediate steps, many resolution algorithms measuring the resolution locally, directionally and in tomograms (MonoRes, MonoDir and MonoTomo), and localDeblur (an algorithm to sharpen maps that uses the local resolution information).
A short presentation with some of these results can be seen at
https://drive.google.com/file/d/1r3RnOw8pkp-BH5KvCxvAdoe-HUPtCddo/view?usp=sharing
Kind regards, Carlos Oscar
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Dear all,
We are pleased to announce the new major release of version SCIPION 2.0. It is freely available for download on Linux here:
http://scipion.i2pc.es/download_form
Key changes for version 2.0 are:
Almost all existing EM packages were updated, such as RELION3, EMAN2.21, Gctf 1.18, SPIDER 25.02, Motioncor2-1.2.1 and others.
Model building tools from CCP4, Chimera, Phenix and powerfit have been added.
Several improvements for streaming: multi-GPU jobs distribution, more protocols supporting batch processing, jobs scheduling, new XMIPP streaming protocols (movie maxshift, ctf selection, GL2D classification on GPU etc.)
Multiple workflow usability and GUI improvements as well as bug fixes for several tasks.
Pluginization: each EM package is now a plugin developed and updated independently from Scipion core. This is a first step towards making Scipion even more modular and easy to use and install for both users and developers. The new repository hosting official plugins is now here:
For your convenience we have developed a Plugin Manager which provides an easy GUI to manage plugins and associated binaries. We already have over 30 plugins including several new ones, such as 3DFSC, CryoEF, Sphire (crYOLO), EMPIAR depositor and others. For more information on each plugin consult its corresponding repo and/ or developers.
For developers and facility managers we now have a slack workspace where you can easily reach other developers and facility staff to get a quick feedback: https://scipion.slack.com/. Contact us at [log in to unmask] for an invitation.
Installation instructions, pre-requisites and a full list of changes are available on our new documentation website.
Best wishes,
_______________________________________________ 3dem mailing list [log in to unmask] https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem
-- ------------------------------------------------------------------------ Carlos Oscar Sánchez Sorzano e-mail: [log in to unmask] Biocomputing unit http://i2pc.es/coss National Center of Biotechnology (CSIC) c/Darwin, 3 Campus Universidad Autónoma (Cantoblanco) Tlf: 34-91-585 4510 28049 MADRID (SPAIN) Fax: 34-91-585 4506 ------------------------------------------------------------------------