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Dear Pranav, thanks! Can you please give me some more details, maybe the entire command line :-) bw Dieter ------------------------------------------------------------------------ Dieter Blaas, Max F. Perutz Laboratories Medical University of Vienna, Inst. Med. Biochem., Vienna Biocenter (VBC), Dr. Bohr Gasse 9/3, A-1030 Vienna, Austria, Tel: 0043 1 4277 61630, Fax: 0043 1 4277 9616, e-mail: [log in to unmask] ------------------------------------------------------------------------ Am 01.04.2019 um 00:42 schrieb Pranav Shah: > Hi Dieter, > > I am not aware of the function in chimera that you alluded to, but I > have had a similar question and used an FSC based metric to determine > the similarity among my 3d classes. I achieve that using combination > of awk and e2proc3d.py --calcfsc. > > Cheers, > Pranav > -- > Pranav Shah > Postdoctoral Research Fellow. > > Hogle Lab > Department of Biological Chemistry and Molecular Pharmacology, > Building C2 - First Floor > 240 Longwood Avenue > Boston, MA 02115 > (617) 432-4360 (fax) > (617) 432-3839 (lab) > > > On Sun, Mar 31, 2019 at 4:21 PM Dieter Blaas > <[log in to unmask]> wrote: >> Dear colleagues, >> >> can somebody please give me a hint of how to calculate the >> correlation between two maps obtained in a Class3D run in relion, >> something like Chimera outputs when aligning volumes. I'd like to see >> how the separation of two maps evolves during the iterations by using >> the command line. I'd prefer a relion or xmipp command... >> >> thanks, bw Dieter >> >> ------------------------------------------------------------------------ >> Dieter Blaas, >> Max F. Perutz Laboratories >> Medical University of Vienna, >> Inst. Med. Biochem., Vienna Biocenter (VBC), >> Dr. Bohr Gasse 9/3, >> A-1030 Vienna, Austria, >> Tel: 0043 1 4277 61630, >> Fax: 0043 1 4277 9616, >> e-mail: [log in to unmask] >> ------------------------------------------------------------------------ >> >> ######################################################################## >> >> To unsubscribe from the CCPEM list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCPEM&A=1 ######################################################################## To unsubscribe from the CCPEM list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCPEM&A=1